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Rapid mutation of endogenous zebrafish genes using zinc finger nucleases made by Oligomerized Pool ENgineering (OPEN)

Foley, Jonathan E ; Yeh, Jing-Ruey J ; Maeder, Morgan L ; Reyon, Deepak ; Sander, Jeffry D ; Peterson, Randall T ; Joung, J Keith Raible, David W.

PloS one, 2009-02, Vol.4 (2), p.e4348 [Periódico revisado por pares]

United States: Public Library of Science

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Título:
Rapid mutation of endogenous zebrafish genes using zinc finger nucleases made by Oligomerized Pool ENgineering (OPEN)
Autor: Foley, Jonathan E ; Yeh, Jing-Ruey J ; Maeder, Morgan L ; Reyon, Deepak ; Sander, Jeffry D ; Peterson, Randall T ; Joung, J Keith
Raible, David W.
Assuntos: Analysis ; Animal genetics ; Animals ; Base Sequence ; Biotechnology ; Consortia ; Danio rerio ; Deoxyribonucleic acid ; DNA ; DNA binding proteins ; DNA damage ; DNA repair ; DNA sequencing ; Dopamine ; Dopamine transporter ; Endonucleases - genetics ; Endonucleases - metabolism ; Engineering ; Exons ; Gene sequencing ; Genes ; Genetic aspects ; Genetic Engineering - methods ; Genomes ; Genomics ; Homology ; Medical research ; Models, Biological ; Molecular Biology ; Molecular Biology/Recombination ; Molecular Sequence Data ; Mutagenesis, Site-Directed ; Mutation ; Non-homologous end joining ; Nuclease ; Nucleases ; Nucleotide sequence ; Nucleotide sequencing ; Oligomerization ; Plant cells ; Studies ; Telomerase ; Transporter ; Zebrafish ; Zebrafish - genetics ; Zebrafish - metabolism ; Zebrafish Proteins - genetics ; Zebrafish Proteins - metabolism ; Zinc ; Zinc finger proteins ; Zinc Fingers - genetics
É parte de: PloS one, 2009-02, Vol.4 (2), p.e4348
Notas: Conceived and designed the experiments: JEF JRJY MLM DR JDS RTP JKJ. Performed the experiments: JEF JRJY MLM DR JDS. Analyzed the data: JEF JRJY MLM DR JDS RTP JKJ. Contributed reagents/materials/analysis tools: MLM DR JDS RTP JKJ. Wrote the paper: JEF JRJY JDS RTP JKJ.
Descrição: Customized zinc finger nucleases (ZFNs) form the basis of a broadly applicable tool for highly efficient genome modification. ZFNs are artificial restriction endonucleases consisting of a non-specific nuclease domain fused to a zinc finger array which can be engineered to recognize specific DNA sequences of interest. Recent proof-of-principle experiments have shown that targeted knockout mutations can be efficiently generated in endogenous zebrafish genes via non-homologous end-joining-mediated repair of ZFN-induced DNA double-stranded breaks. The Zinc Finger Consortium, a group of academic laboratories committed to the development of engineered zinc finger technology, recently described the first rapid, highly effective, and publicly available method for engineering zinc finger arrays. The Consortium has previously used this new method (known as OPEN for Oligomerized Pool ENgineering) to generate high quality ZFN pairs that function in human and plant cells. Here we show that OPEN can also be used to generate ZFNs that function efficiently in zebrafish. Using OPEN, we successfully engineered ZFN pairs for five endogenous zebrafish genes: tfr2, dopamine transporter, telomerase, hif1aa, and gridlock. Each of these ZFN pairs induces targeted insertions and deletions with high efficiency at its endogenous gene target in somatic zebrafish cells. In addition, these mutations are transmitted through the germline with sufficiently high frequency such that only a small number of fish need to be screened to identify founders. Finally, in silico analysis demonstrates that one or more potential OPEN ZFN sites can be found within the first three coding exons of more than 25,000 different endogenous zebrafish gene transcripts. In summary, our study nearly triples the total number of endogenous zebrafish genes successfully modified using ZFNs (from three to eight) and suggests that OPEN provides a reliable method for introducing targeted mutations in nearly any zebrafish gene of interest.
Editor: United States: Public Library of Science
Idioma: Inglês

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Rapid mutation of endogenous zebrafish genes using zinc finger nucleases made by Oligomerized Pool ENgineering (OPEN)

Foley, Jonathan E ; Yeh, Jing-Ruey J ; Maeder, Morgan L ; Reyon, Deepak ; Sander, Jeffry D ; Peterson, Randall T ; Joung, J Keith Raible, David W.

United States: Public Library of Science

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