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Bayesian phylogenetics with BEAUti and the BEAST 1.7

Drummond, Alexei J ; Suchard, Marc A ; Xie, Dong ; Rambaut, Andrew

Molecular biology and evolution, 2012-08, Vol.29 (8), p.1969-1973 [Periódico revisado por pares]

United States: Oxford Publishing Limited (England)

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Título:
Bayesian phylogenetics with BEAUti and the BEAST 1.7
Autor: Drummond, Alexei J ; Suchard, Marc A ; Xie, Dong ; Rambaut, Andrew
Assuntos: Algorithms ; Animals ; Base Sequence ; Bayes Theorem ; Bayesian analysis ; Computational Biology - methods ; DNA, Mitochondrial - genetics ; Finches - genetics ; Genotype & phenotype ; Markov analysis ; Molecular biology ; Molecular Sequence Data ; Monte Carlo simulation ; Phenotype ; Phylogenetics ; Phylogeny ; Software ; User-Computer Interface
É parte de: Molecular biology and evolution, 2012-08, Vol.29 (8), p.1969-1973
Notas: ObjectType-Article-1
SourceType-Scholarly Journals-1
ObjectType-Feature-2
content type line 23
Associate editor: Sudhir Kumar
Descrição: Computational evolutionary biology, statistical phylogenetics and coalescent-based population genetics are becoming increasingly central to the analysis and understanding of molecular sequence data. We present the Bayesian Evolutionary Analysis by Sampling Trees (BEAST) software package version 1.7, which implements a family of Markov chain Monte Carlo (MCMC) algorithms for Bayesian phylogenetic inference, divergence time dating, coalescent analysis, phylogeography and related molecular evolutionary analyses. This package includes an enhanced graphical user interface program called Bayesian Evolutionary Analysis Utility (BEAUti) that enables access to advanced models for molecular sequence and phenotypic trait evolution that were previously available to developers only. The package also provides new tools for visualizing and summarizing multispecies coalescent and phylogeographic analyses. BEAUti and BEAST 1.7 are open source under the GNU lesser general public license and available at http://beast-mcmc.googlecode.com and http://beast.bio.ed.ac.uk.
Editor: United States: Oxford Publishing Limited (England)
Idioma: Inglês

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Bayesian phylogenetics with BEAUti and the BEAST 1.7

Drummond, Alexei J ; Suchard, Marc A ; Xie, Dong ; Rambaut, Andrew

United States: Oxford Publishing Limited (England)

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