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MAFFT multiple sequence alignment software version 7: improvements in performance and usability

Katoh, Kazutaka ; Standley, Daron M

Molecular biology and evolution, 2013-04, Vol.30 (4), p.772-780 [Periódico revisado por pares]

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Título:
MAFFT multiple sequence alignment software version 7: improvements in performance and usability
Autor: Katoh, Kazutaka ; Standley, Daron M
Assuntos: Algorithms ; Amino Acid Sequence ; Base Sequence ; DNA, Fungal - genetics ; DNA, Ribosomal - genetics ; DNA, Ribosomal Spacer - genetics ; Fast Tracks ; Fungi - genetics ; Humans ; Models, Genetic ; Molecular biology ; Molecular Sequence Data ; Phylogeny ; Protein Structure, Tertiary ; Proteins ; Quality Improvement ; Ribonucleases - chemistry ; Ribonucleases - genetics ; Ribosome Subunits, Small, Bacterial - genetics ; RNA, Bacterial - genetics ; Sequence Alignment - methods ; Software
É parte de: Molecular biology and evolution, 2013-04, Vol.30 (4), p.772-780
Notas: Associate editor: Sudhir Kumar
Descrição: We report a major update of the MAFFT multiple sequence alignment program. This version has several new features, including options for adding unaligned sequences into an existing alignment, adjustment of direction in nucleotide alignment, constrained alignment and parallel processing, which were implemented after the previous major update. This report shows actual examples to explain how these features work, alone and in combination. Some examples incorrectly aligned by MAFFT are also shown to clarify its limitations. We discuss how to avoid misalignments, and our ongoing efforts to overcome such limitations.
Editor: United States: Oxford Publishing Limited (England)
Idioma: Inglês

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