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Mol Viewer: modern web app for 3D visualization and analysis of large biomolecular structures

Sehnal, David ; Bittrich, Sebastian ; Deshpande, Mandar ; Svobodová, Radka ; Berka, Karel ; Bazgier, Václav ; Velankar, Sameer ; Burley, Stephen K ; Koča, Jaroslav ; Rose, Alexander S

Nucleic acids research, 2021-05, Vol.49 (W1), p.W431-W437 [Periódico revisado por pares]

England: Oxford University Press

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  • Título:
    Mol Viewer: modern web app for 3D visualization and analysis of large biomolecular structures
  • Autor: Sehnal, David ; Bittrich, Sebastian ; Deshpande, Mandar ; Svobodová, Radka ; Berka, Karel ; Bazgier, Václav ; Velankar, Sameer ; Burley, Stephen K ; Koča, Jaroslav ; Rose, Alexander S
  • Assuntos: Web Server Issue
  • É parte de: Nucleic acids research, 2021-05, Vol.49 (W1), p.W431-W437
  • Notas: ObjectType-Article-1
    SourceType-Scholarly Journals-1
    ObjectType-Feature-2
    content type line 23
    USDOE
    SSC0019749
  • Descrição: Abstract Large biomolecular structures are being determined experimentally on a daily basis using established techniques such as crystallography and electron microscopy. In addition, emerging integrative or hybrid methods (I/HM) are producing structural models of huge macromolecular machines and assemblies, sometimes containing 100s of millions of non-hydrogen atoms. The performance requirements for visualization and analysis tools delivering these data are increasing rapidly. Significant progress in developing online, web-native three-dimensional (3D) visualization tools was previously accomplished with the introduction of the LiteMol suite and NGL Viewers. Thereafter, Mol* development was jointly initiated by PDBe and RCSB PDB to combine and build on the strengths of LiteMol (developed by PDBe) and NGL (developed by RCSB PDB). The web-native Mol* Viewer enables 3D visualization and streaming of macromolecular coordinate and experimental data, together with capabilities for displaying structure quality, functional, or biological context annotations. High-performance graphics and data management allows users to simultaneously visualise up to hundreds of (superimposed) protein structures, stream molecular dynamics simulation trajectories, render cell-level models, or display huge I/HM structures. It is the primary 3D structure viewer used by PDBe and RCSB PDB. It can be easily integrated into third-party services. Mol* Viewer is open source and freely available at https://molstar.org/. Graphical Abstract Graphical Abstract Overview of the large array of entities and systems that can be visualized and be manipulated with by the Mol* Viewer.
  • Editor: England: Oxford University Press
  • Idioma: Inglês
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  • Realização: ABCD-USP USP   Logos de Redes Sociais: Freepik

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