Idioma:

The first myriapod genome sequence reveals conservative arthropod gene content and genome organisation in the centipede Strigamia maritima

Chipman, Ariel D ; Ferrier, David E K ; Brena, Carlo ; Hughes, Daniel S T ; Schröder, Reinhard ; Torres-Oliva, Montserrat ; Znassi, Nadia ; Jiang, Huaiyang ; Almeida, Francisca C ; Alonso, Claudio R ; Apostolou, Zivkos ; Aqrawi, Peshtewani ; Arthur, Wallace ; Barna, Jennifer C J ; Blankenburg, Kerstin P ; Brites, Daniela ; Capella-Gutiérrez, Salvador ; Coyle, Marcus ; Dearden, Peter K ; Du Pasquier, Louis ; Duncan, Elizabeth J ; Ebert, Dieter ; Eibner, Cornelius ; Erikson, Galina ; Evans, Peter D ; Extavour, Cassandra G ; Francisco, Liezl ; Gabaldón, Toni ; Gillis, William J ; Green, Jack E ; Griffiths-Jones, Sam ; Grimmelikhuijzen, Cornelis J P ; Gubbala, Sai ; Guigó, Roderic ; Han, Yi ; Hauser, Frank ; Havlak, Paul ; Hayden, Luke ; Helbing, Sophie ; Holder, Michael ; Hui, Jerome H L ; Hunn, Julia P ; Hunnekuhl, Vera S ; Jackson, LaRonda ; Javaid, Mehwish ; Jhangiani, Shalini N ; Jiggins, Francis M ; Jones, Tamsin E ; Kenny, Nathan J ; Korchina, Viktoriya ; Kovar, Christie L ; Lapraz, François ; Lee, Sandra L ; Lv, Jie ; Mandapat, Christigale ; Manning, Gerard ; Mariotti, Marco ; Mata, Robert ; Mathew, Tittu ; Neumann, Tobias ; Newsham, Irene ; Ngo, Dinh N ; Ninova, Maria ; Okwuonu, Geoffrey ; Ongeri, Fiona ; Palmer, William J ; Patil, Shobha ; Patraquim, Pedro ; Pham, Christopher ; Pu, Ling-Ling ; Rabouille, Catherine ; Ramos, Olivia Mendivil ; Rhodes, Adelaide C ; Robertson, Helen E ; Robertson, Hugh M ; Ronshaugen, Matthew ; Rozas, Julio ; Saada, Nehad ; Sánchez-Gracia, Alejandro ; Scherer, Steven E ; Schurko, Andrew M ; Siggens, Kenneth W ; Simmons, DeNard ; Stief, Anna ; Stolle, Eckart ; Telford, Maximilian J ; Tessmar-Raible, Kristin ; Thornton, Rebecca ; van der Zee, Maurijn ; von Haeseler, Arndt ; Williams, James M ; Willis, Judith H ; Wu, Yuanqing ; Zou, Xiaoyan ; Lawson, Daniel ; Muzny, Donna M ; Worley, Kim C ; Gibbs, Richard A ; Akam, Michael ; Richards, Stephen Tyler-Smith, Chris

PLoS Biology, 2014-11, Vol.12 (11), p.e1002005-e1002005 [Periódico revisado por pares]

United States: Public Library of Science

Texto completo disponível

Citações Citado por

Enviar para

Título:
The first myriapod genome sequence reveals conservative arthropod gene content and genome organisation in the centipede Strigamia maritima
Autor: Chipman, Ariel D ; Ferrier, David E K ; Brena, Carlo ; Hughes, Daniel S T ; Schröder, Reinhard ; Torres-Oliva, Montserrat ; Znassi, Nadia ; Jiang, Huaiyang ; Almeida, Francisca C ; Alonso, Claudio R ; Apostolou, Zivkos ; Aqrawi, Peshtewani ; Arthur, Wallace ; Barna, Jennifer C J ; Blankenburg, Kerstin P ; Brites, Daniela ; Capella-Gutiérrez, Salvador ; Coyle, Marcus ; Dearden, Peter K ; Du Pasquier, Louis ; Duncan, Elizabeth J ; Ebert, Dieter ; Eibner, Cornelius ; Erikson, Galina ; Evans, Peter D ; Extavour, Cassandra G ; Francisco, Liezl ; Gabaldón, Toni ; Gillis, William J ; Green, Jack E ; Griffiths-Jones, Sam ; Grimmelikhuijzen, Cornelis J P ; Gubbala, Sai ; Guigó, Roderic ; Han, Yi ; Hauser, Frank ; Havlak, Paul ; Hayden, Luke ; Helbing, Sophie ; Holder, Michael ; Hui, Jerome H L ; Hunn, Julia P ; Hunnekuhl, Vera S ; Jackson, LaRonda ; Javaid, Mehwish ; Jhangiani, Shalini N ; Jiggins, Francis M ; Jones, Tamsin E ; Kenny, Nathan J ; Korchina, Viktoriya ; Kovar, Christie L ; Lapraz, François ; Lee, Sandra L ; Lv, Jie ; Mandapat, Christigale ; Manning, Gerard ; Mariotti, Marco ; Mata, Robert ; Mathew, Tittu ; Neumann, Tobias ; Newsham, Irene ; Ngo, Dinh N ; Ninova, Maria ; Okwuonu, Geoffrey ; Ongeri, Fiona ; Palmer, William J ; Patil, Shobha ; Patraquim, Pedro ; Pham, Christopher ; Pu, Ling-Ling ; Rabouille, Catherine ; Ramos, Olivia Mendivil ; Rhodes, Adelaide C ; Robertson, Helen E ; Robertson, Hugh M ; Ronshaugen, Matthew ; Rozas, Julio ; Saada, Nehad ; Sánchez-Gracia, Alejandro ; Scherer, Steven E ; Schurko, Andrew M ; Siggens, Kenneth W ; Simmons, DeNard ; Stief, Anna ; Stolle, Eckart ; Telford, Maximilian J ; Tessmar-Raible, Kristin ; Thornton, Rebecca ; van der Zee, Maurijn ; von Haeseler, Arndt ; Williams, James M ; Willis, Judith H ; Wu, Yuanqing ; Zou, Xiaoyan ; Lawson, Daniel ; Muzny, Donna M ; Worley, Kim C ; Gibbs, Richard A ; Akam, Michael ; Richards, Stephen
Tyler-Smith, Chris
Assuntos: Animals ; Arthropods - genetics ; Biology and Life Sciences ; Circadian Rhythm Signaling Peptides and Proteins - genetics ; Colleges & universities ; DNA Methylation ; DNA sequencing ; Evolution, Molecular ; Female ; Genes ; Genetic research ; Genome ; Genome, Mitochondrial ; Genomes ; Genomics ; Genètica animal ; Genètica evolutiva ; Hormones - genetics ; Insects ; Male ; Multigene Family ; Nucleotide sequencing ; Phylogenetics ; Phylogeny ; Polymorphism, Genetic ; Project management ; Protein Kinases - genetics ; Proteins ; Receptors, Odorant - genetics ; RNA, Untranslated - genetics ; Scholarships & fellowships ; Selenoproteins - genetics ; Sex Chromosomes ; Synteny ; Transcription Factors - genetics ; Zoological research
É parte de: PLoS Biology, 2014-11, Vol.12 (11), p.e1002005-e1002005
Notas: ObjectType-Article-1
SourceType-Scholarly Journals-1
ObjectType-Feature-2
content type line 23
Current address: Centre de Recherche de Biochimie Macromoléculaire, Bioinformatique Structurale et Modélisation Moléculaire, Montpellier, France
Current address: Institute for Applied Cancer Science, MD Anderson Cancer Center, Houston, Texas, United States of America
Current address: Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, United States of America
The authors have declared that no competing interests exist.
Current address: Department of Developmental Biology, Georg-August-Universität Göttingen, Johann-Friedrich-Blumenbach-Institut für Zoologie und Anthropologie, Abteilung Entwicklungsbiologie, GZMB, Göttingen, Germany
Current address: Genentech, Inc., South San Francisco, California, United States of America
Current address: Department of Genetics, Friedrich Schiller University, Germany
ADC and DEKF are joint senior authors on this work.
The author(s) have made the following declarations about their contributions: Conceived and designed the experiments: MA SR. Performed the experiments: CB SES SNJ NS LLP SP XZ SG KPB SLL IN YW VK GO RM CP LF DS DNN PA MC LJ CM TM MJ RT CLK MH MJ FO YH JQ SR KCW HJ DSTH DL DK DMM MA RAG. Analyzed the data: HJ SR KCW DSTH DL CB TG SCG NHP PH JL MTO NZ JCJB DSTH DL DEKF OMR VSH KWS AS ZA RS JEG PP CRA WA LH CE PKD EJD LDP DE DB PDE CGE TEJ CJPG FH JHLH NJK FMJ WJP GM GE MM RG ACR MJT FL HER MR SGJ MN JR ASG FCA HMR ES FBK SH TSK TN AVH KTR MVDZ CR JPH JHW AMS EAGH JMW WJG ADC. Contributed reagents/materials/analysis tools: RAG MA DMM CB DSTH DL MTO NZ JCJB DSTH DL TG SCG NHP PH JL DK. Wrote the paper: ADC DEKF RS MA SR. Project management and senior authors: ADC DEKF RS MA SR. Sequencing PI: RAG. Centipede PI: MA. Specimen identification and preparation: CB. Sequencing operations manager: DMM. Sequencing project management: SES SNJ. Library: NS L-LP SP XZ SG KPB SLL IN YW. 454 sequencing: VK GO RM CP LF DS DNN PA MC LJ CM TM MJ RT CLK MH. Illumina sequencing: MJ FO YH. Assembly: JQ SR KCW. Automated annotation: HJ SR KCW DSTH DL. Submissions: DK. PhyloDB: TG SC-G. Chromosomal synteny conservation: NHP PH JL. Manual annotation: organization: MT-O NZ JCJB DSTH DL. Homeobox genes: DEKF OMR VSH KWS AS ZA. FGF signaling: RS. Sex chromosomes: JEG. Hox mRNA: PP CRA. wnt signaling: WA LH RS CE. Conserved gene clusters and methylation: PKD EJD. Dscam: LDP DE DB. Biogenic amine receptors: PDE. Germline genes: CGE TEJ. Neuropeptides and receptors: CJPG FH. Juvenile hormone systems: JHLH NJK. Immunity: FMJ WJP. Kinome: GM GE. Selenoproteins: MM RG. Mitochondria: ACR MJT FL HER. MiRNAs: MR SG-J MN. Chemosensory genes: JR AS-G FCA HMR. Repetitive elements: ES FBK SH. Light perception and circadian clock: TSK TN AVH KT-R. Innexins and TGF beta: MVDZ CR JPH. Cuticular proteins: JHW. Meiosis genes: AMS EAG-H JMW. Developmental transcription factors: WJG ADC VH JEG CB ZA.
Current address: M.D. Anderson Cancer Center, Houston, Texas, United States of America
Current address: Stanley Institute for Cognitive Genomics, Cold Spring Harbor Laboratory, New York, United States of America
Descrição: Myriapods (e.g., centipedes and millipedes) display a simple homonomous body plan relative to other arthropods. All members of the class are terrestrial, but they attained terrestriality independently of insects. Myriapoda is the only arthropod class not represented by a sequenced genome. We present an analysis of the genome of the centipede Strigamia maritima. It retains a compact genome that has undergone less gene loss and shuffling than previously sequenced arthropods, and many orthologues of genes conserved from the bilaterian ancestor that have been lost in insects. Our analysis locates many genes in conserved macro-synteny contexts, and many small-scale examples of gene clustering. We describe several examples where S. maritima shows different solutions from insects to similar problems. The insect olfactory receptor gene family is absent from S. maritima, and olfaction in air is likely effected by expansion of other receptor gene families. For some genes S. maritima has evolved paralogues to generate coding sequence diversity, where insects use alternate splicing. This is most striking for the Dscam gene, which in Drosophila generates more than 100,000 alternate splice forms, but in S. maritima is encoded by over 100 paralogues. We see an intriguing linkage between the absence of any known photosensory proteins in a blind organism and the additional absence of canonical circadian clock genes. The phylogenetic position of myriapods allows us to identify where in arthropod phylogeny several particular molecular mechanisms and traits emerged. For example, we conclude that juvenile hormone signalling evolved with the emergence of the exoskeleton in the arthropods and that RR-1 containing cuticle proteins evolved in the lineage leading to Mandibulata. We also identify when various gene expansions and losses occurred. The genome of S. maritima offers us a unique glimpse into the ancestral arthropod genome, while also displaying many adaptations to its specific life history.
Editor: United States: Public Library of Science
Idioma: Inglês

Links

View this record in MEDLINE/PubMed

Voltar para lista de resultados

Realização: Logos de Redes Sociais:

The first myriapod genome sequence reveals conservative arthropod gene content and genome organisation in the centipede Strigamia maritima

United States: Public Library of Science

Buscando em bases de dados remotas. Favor aguardar.