Idioma:

F-Seq: a feature density estimator for high-throughput sequence tags

Boyle, Alan P. ; Guinney, Justin ; Crawford, Gregory E. ; Furey, Terrence S.

Bioinformatics, 2008-11, Vol.24 (21), p.2537-2538 [Periódico revisado por pares]

Oxford: Oxford University Press

Texto completo disponível

Citações Citado por

Enviar para

Título:
F-Seq: a feature density estimator for high-throughput sequence tags
Autor: Boyle, Alan P. ; Guinney, Justin ; Crawford, Gregory E. ; Furey, Terrence S.
Assuntos: Algorithms ; Applications Note ; Bandwidths ; Binding sites ; Bioinformatics ; Biological and medical sciences ; Chromatin ; Chromatin Immunoprecipitation ; Chromosomes ; Density ; Deoxyribonuclease ; Deoxyribonuclease I - chemistry ; Deoxyribonuclease I - genetics ; Estimates ; Fundamental and applied biological sciences. Psychology ; General aspects ; Genome ; Genomes ; Histograms ; Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects) ; Methods ; Next-generation sequencing ; Probability ; Sequence Analysis, DNA - methods ; Sequence Tagged Sites ; Software ; Software packages ; Transcription factors
É parte de: Bioinformatics, 2008-11, Vol.24 (21), p.2537-2538
Notas: ArticleID:btn480
To whom correspondence should be addressed.
istex:49DE603128E37E294DB49B05A50F50F9D95D35A8
ark:/67375/HXZ-R95D6VWT-3
Associate Editor: Alfonso Valencia
ObjectType-Article-2
SourceType-Scholarly Journals-1
ObjectType-Feature-1
content type line 23
ObjectType-Article-1
ObjectType-Feature-2
Descrição: Tag sequencing using high-throughput sequencing technologies are now regularly employed to identify specific sequence features, such as transcription factor binding sites (ChIP-seq) or regions of open chromatin (DNase-seq). To intuitively summarize and display individual sequence data as an accurate and interpretable signal, we developed F-Seq, a software package that generates a continuous tag sequence density estimation allowing identification of biologically meaningful sites whose output can be displayed directly in the UCSC Genome Browser. Availability: The software is written in the Java language and is available on all major computing platforms for download at http://www.genome.duke.edu/labs/furey/software/fseq. Contact: terry.furey@duke.edu
Editor: Oxford: Oxford University Press
Idioma: Inglês

Links

Voltar para lista de resultados

Realização: Logos de Redes Sociais:

F-Seq: a feature density estimator for high-throughput sequence tags

Boyle, Alan P. ; Guinney, Justin ; Crawford, Gregory E. ; Furey, Terrence S.

Oxford: Oxford University Press

Buscando em bases de dados remotas. Favor aguardar.