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1
Microbial defenses against mobile genetic elements and viruses: Who defends whom from what?
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Microbial defenses against mobile genetic elements and viruses: Who defends whom from what?

Rocha, Eduardo P C ; Bikard, David

PLoS biology, 2022-01, Vol.20 (1), p.e3001514-e3001514 [Peer Reviewed Journal]

United States: Public Library of Science

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2
Diversification of the type IV filament superfamily into machines for adhesion, protein secretion, DNA uptake, and motility
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Diversification of the type IV filament superfamily into machines for adhesion, protein secretion, DNA uptake, and motility

Denise, Rémi ; Abby, Sophie S ; Rocha, Eduardo P C Beeby, Morgan

PLoS biology, 2019-07, Vol.17 (7), p.e3000390-e3000390 [Peer Reviewed Journal]

United States: Public Library of Science

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3
The small, slow and specialized CRISPR and anti-CRISPR of Escherichia and Salmonella
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Article
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The small, slow and specialized CRISPR and anti-CRISPR of Escherichia and Salmonella

Touchon, Marie ; Rocha, Eduardo P C Randau, Lennart

PloS one, 2010-06, Vol.5 (6), p.e11126-e11126 [Peer Reviewed Journal]

United States: Public Library of Science

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4
Horizontal transfer, not duplication, drives the expansion of protein families in prokaryotes
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Horizontal transfer, not duplication, drives the expansion of protein families in prokaryotes

Treangen, Todd J ; Rocha, Eduardo P C Moran, Nancy A.

PLoS genetics, 2011-01, Vol.7 (1), p.e1001284 [Peer Reviewed Journal]

United States: Public Library of Science

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5
The non-flagellar type III secretion system evolved from the bacterial flagellum and diversified into host-cell adapted systems
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The non-flagellar type III secretion system evolved from the bacterial flagellum and diversified into host-cell adapted systems

Abby, Sophie S ; Rocha, Eduardo P C Achtman, Mark

PLoS genetics, 2012-09, Vol.8 (9), p.e1002983-e1002983 [Peer Reviewed Journal]

United States: Public Library of Science

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6
MacSyFinder: a program to mine genomes for molecular systems with an application to CRISPR-Cas systems
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Article
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MacSyFinder: a program to mine genomes for molecular systems with an application to CRISPR-Cas systems

Abby, Sophie S ; Néron, Bertrand ; Ménager, Hervé ; Touchon, Marie ; Rocha, Eduardo P C Torres, Néstor V.

PloS one, 2014-10, Vol.9 (10), p.e110726-e110726 [Peer Reviewed Journal]

United States: Public Library of Science

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7
Interplay between the cell envelope and mobile genetic elements shapes gene flow in populations of the nosocomial pathogen Klebsiella pneumoniae
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Interplay between the cell envelope and mobile genetic elements shapes gene flow in populations of the nosocomial pathogen Klebsiella pneumoniae

Haudiquet, Matthieu ; Buffet, Amandine ; Rendueles, Olaya ; Rocha, Eduardo P. C. de Visser, J. Arjan G. M.

PLoS biology, 2021-07, Vol.19 (7), p.e3001276-e3001276 [Peer Reviewed Journal]

San Francisco: Public Library of Science

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8
The systemic imprint of growth and its uses in ecological (meta)genomics
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The systemic imprint of growth and its uses in ecological (meta)genomics

Vieira-Silva, Sara ; Rocha, Eduardo P C Moran, Nancy A.

PLoS genetics, 2010-01, Vol.6 (1), p.e1000808 [Peer Reviewed Journal]

United States: Public Library of Science

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9
Vehicular Edge Computing: Architecture, Resource Management, Security, and Challenges
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Vehicular Edge Computing: Architecture, Resource Management, Security, and Challenges

Meneguette, Rodolfo ; De Grande, Robson ; Ueyama, Jo ; Filho, Geraldo P. Rocha ; Madeira, Edmundo

ACM computing surveys, 2023-01, Vol.55 (1), p.1-46 [Peer Reviewed Journal]

Baltimore: Association for Computing Machinery

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10
PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph
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PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph

Gautreau, Guillaume ; Bazin, Adelme ; Gachet, Mathieu ; Planel, Rémi ; Burlot, Laura ; Dubois, Mathieu ; Perrin, Amandine ; Médigue, Claudine ; Calteau, Alexandra ; Cruveiller, Stéphane ; Matias, Catherine ; Ambroise, Christophe ; Rocha, Eduardo P C ; Vallenet, David Ouzounis, Christos A.

PLoS computational biology, 2020-03, Vol.16 (3), p.e1007732-e1007732 [Peer Reviewed Journal]

United States: Public Library of Science

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