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SciClone: inferring clonal architecture and tracking the spatial and temporal patterns of tumor evolution
SciClone: inferring clonal architecture and tracking the spatial and temporal patterns of tumor evolution
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SciClone: inferring clonal architecture and tracking the spatial and temporal patterns of tumor evolution

Miller, Christopher A ; White, Brian S ; Dees, Nathan D ; Griffith, Malachi ; Welch, John S ; Griffith, Obi L ; Vij, Ravi ; Tomasson, Michael H ; Graubert, Timothy A ; Walter, Matthew J ; Ellis, Matthew J ; Schierding, William ; DiPersio, John F ; Ley, Timothy J ; Mardis, Elaine R ; Wilson, Richard K ; Ding, Li Beerenwinkel, Niko

PLoS computational biology, 2014-08, Vol.10 (8), p.e1003665-e1003665 [Periódico revisado por pares]

United States: Public Library of Science

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Quantifying Differences and Similarities in Whole-Brain White Matter Architecture Using Local Connectome Fingerprints
Quantifying Differences and Similarities in Whole-Brain White Matter Architecture Using Local Connectome Fingerprints
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Quantifying Differences and Similarities in Whole-Brain White Matter Architecture Using Local Connectome Fingerprints

Yeh, Fang-Cheng ; Vettel, Jean M ; Singh, Aarti ; Poczos, Barnabas ; Grafton, Scott T ; Erickson, Kirk I ; Tseng, Wen-Yih I ; Verstynen, Timothy D Diedrichsen, Jörn

PLoS computational biology, 2016-11, Vol.12 (11), p.e1005203-e1005203 [Periódico revisado por pares]

United States: Public Library of Science

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3
Global and local architecture of the mammalian microRNA-transcription factor regulatory network
Global and local architecture of the mammalian microRNA-transcription factor regulatory network
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Global and local architecture of the mammalian microRNA-transcription factor regulatory network

Shalgi, Reut ; Lieber, Daniel ; Oren, Moshe ; Pilpel, Yitzhak Stormo, Gary

PLoS computational biology, 2007-07, Vol.3 (7), p.e131-e131 [Periódico revisado por pares]

United States: Public Library of Science

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4
Evolution of bow-tie architectures in biology
Evolution of bow-tie architectures in biology
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Evolution of bow-tie architectures in biology

Friedlander, Tamar ; Mayo, Avraham E ; Tlusty, Tsvi ; Alon, Uri Rzhetsky, Andrey

PLoS computational biology, 2015-03, Vol.11 (3), p.e1004055-e1004055 [Periódico revisado por pares]

United States: Public Library of Science

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5
The mechanical influence of densification on epithelial architecture
The mechanical influence of densification on epithelial architecture
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The mechanical influence of densification on epithelial architecture

Cammarota, Christian ; Dawney, Nicole S ; Bellomio, Philip M ; Jüng, Maren ; Fletcher, Alexander G ; Finegan, Tara M ; Bergstralh, Dan T Ciliberto, Andrea

PLoS computational biology, 2024-04, Vol.20 (4), p.e1012001-e1012001 [Periódico revisado por pares]

United States: Public Library of Science

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Non-equilibrium critical dynamics of bursts in θ and δ rhythms as fundamental characteristic of sleep and wake micro-architecture
Non-equilibrium critical dynamics of bursts in θ and δ rhythms as fundamental characteristic of sleep and wake micro-architecture
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Non-equilibrium critical dynamics of bursts in θ and δ rhythms as fundamental characteristic of sleep and wake micro-architecture

Wang, Jilin W J L ; Lombardi, Fabrizio ; Zhang, Xiyun ; Anaclet, Christelle ; Ivanov, Plamen Ch Ermentrout, Bard

PLoS computational biology, 2019-11, Vol.15 (11), p.e1007268 [Periódico revisado por pares]

United States: Public Library of Science

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7
Architecture of the brain's visual system enhances network stability and performance through layers, delays, and feedback
Architecture of the brain's visual system enhances network stability and performance through layers, delays, and feedback
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Architecture of the brain's visual system enhances network stability and performance through layers, delays, and feedback

Velarde, Osvaldo Matias ; Makse, Hernán A ; Parra, Lucas C Linsley, Drew

PLoS computational biology, 2023-11, Vol.19 (11), p.e1011078-e1011078 [Periódico revisado por pares]

United States: Public Library of Science

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8
Role of dynamic nuclear deformation on genomic architecture reorganization
Role of dynamic nuclear deformation on genomic architecture reorganization
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Role of dynamic nuclear deformation on genomic architecture reorganization

Seirin-Lee, Sungrim ; Osakada, Fumitaka ; Takeda, Junichi ; Tashiro, Satoshi ; Kobayashi, Ryo ; Yamamoto, Takashi ; Ochiai, Hiroshi Morozov, Alexandre V.

PLoS computational biology, 2019-09, Vol.15 (9), p.e1007289-e1007289 [Periódico revisado por pares]

United States: Public Library of Science

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9
Controlling gene expression timing through gene regulatory architecture
Controlling gene expression timing through gene regulatory architecture
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Controlling gene expression timing through gene regulatory architecture

Ali, Md Zulfikar ; Brewster, Robert C Morozov, Alexandre V.

PLoS computational biology, 2022-01, Vol.18 (1), p.e1009745-e1009745 [Periódico revisado por pares]

United States: Public Library of Science

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10
Diffusion controls local versus dispersed inheritance of histones during replication and shapes epigenomic architecture
Diffusion controls local versus dispersed inheritance of histones during replication and shapes epigenomic architecture
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Diffusion controls local versus dispersed inheritance of histones during replication and shapes epigenomic architecture

Singh, Archit ; Chakrabarti, Shaon Hyeon, Changbong

PLoS computational biology, 2023-12, Vol.19 (12), p.e1011725 [Periódico revisado por pares]

United States: Public Library of Science

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