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Exploring genomic alteration in pediatric cancer using ProteinPaint
Exploring genomic alteration in pediatric cancer using ProteinPaint
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Exploring genomic alteration in pediatric cancer using ProteinPaint

Zhou, Xin ; Edmonson, Michael N ; Wilkinson, Mark R ; Patel, Aman ; Wu, Gang ; Liu, Yu ; Li, Yongjin ; Zhang, Zhaojie ; Rusch, Michael C ; Parker, Matthew ; Becksfort, Jared ; Downing, James R ; Zhang, Jinghui

Nature genetics, 2016-01, Vol.48 (1), p.4-6 [Periódico revisado por pares]

United States: Nature Publishing Group

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2
Analysis of error profiles in deep next-generation sequencing data
Analysis of error profiles in deep next-generation sequencing data
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Analysis of error profiles in deep next-generation sequencing data

Ma, Xiaotu ; Shao, Ying ; Tian, Liqing ; Flasch, Diane A ; Mulder, Heather L ; Edmonson, Michael N ; Liu, Yu ; Chen, Xiang ; Newman, Scott ; Nakitandwe, Joy ; Li, Yongjin ; Li, Benshang ; Shen, Shuhong ; Wang, Zhaoming ; Shurtleff, Sheila ; Robison, Leslie L ; Levy, Shawn ; Easton, John ; Zhang, Jinghui

Genome Biology, 2019-03, Vol.20 (1), p.50-50, Article 50 [Periódico revisado por pares]

England: BioMed Central

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3
CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data
CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data
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CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data

Tian, Liqing ; Li, Yongjin ; Edmonson, Michael N ; Zhou, Xin ; Newman, Scott ; McLeod, Clay ; Thrasher, Andrew ; Liu, Yu ; Tang, Bo ; Rusch, Michael C ; Easton, John ; Ma, Jing ; Davis, Eric ; Trull, Austyn ; Michael, J Robert ; Szlachta, Karol ; Mullighan, Charles ; Baker, Suzanne J ; Downing, James R ; Ellison, David W ; Zhang, Jinghui

Genome Biology, 2020-05, Vol.21 (1), p.126-126, Article 126 [Periódico revisado por pares]

England: BioMed Central

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4
Clinical cancer genomic profiling by three-platform sequencing of whole genome, whole exome and transcriptome
Clinical cancer genomic profiling by three-platform sequencing of whole genome, whole exome and transcriptome
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Clinical cancer genomic profiling by three-platform sequencing of whole genome, whole exome and transcriptome

Rusch, Michael ; Nakitandwe, Joy ; Shurtleff, Sheila ; Newman, Scott ; Zhang, Zhaojie ; Edmonson, Michael N ; Parker, Matthew ; Jiao, Yuannian ; Ma, Xiaotu ; Liu, Yanling ; Gu, Jiali ; Walsh, Michael F ; Becksfort, Jared ; Thrasher, Andrew ; Li, Yongjin ; McMurry, James ; Hedlund, Erin ; Patel, Aman ; Easton, John ; Yergeau, Donald ; Vadodaria, Bhavin ; Tatevossian, Ruth G ; Raimondi, Susana ; Hedges, Dale ; Chen, Xiang ; Hagiwara, Kohei ; McGee, Rose ; Robinson, Giles W ; Klco, Jeffery M ; Gruber, Tanja A ; Ellison, David W ; Downing, James R ; Zhang, Jinghui

Nature communications, 2018-09, Vol.9 (1), p.3962-13, Article 3962 [Periódico revisado por pares]

England: Nature Publishing Group

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5
indelPost: harmonizing ambiguities in simple and complex indel alignments
indelPost: harmonizing ambiguities in simple and complex indel alignments
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indelPost: harmonizing ambiguities in simple and complex indel alignments

Hagiwara, Kohei ; Edmonson, Michael N ; Wheeler, David A ; Zhang, Jinghui Alkan, Can

Bioinformatics, 2022-01, Vol.38 (2), p.549-551 [Periódico revisado por pares]

England: Oxford University Press

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6
Pan-cancer genome and transcriptome analyses of 1,699 paediatric leukaemias and solid tumours
Pan-cancer genome and transcriptome analyses of 1,699 paediatric leukaemias and solid tumours
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Pan-cancer genome and transcriptome analyses of 1,699 paediatric leukaemias and solid tumours

Ma, Xiaotu ; Liu, Yu ; Liu, Yanling ; Alexandrov, Ludmil B ; Edmonson, Michael N ; Gawad, Charles ; Zhou, Xin ; Li, Yongjin ; Rusch, Michael C ; Easton, John ; Huether, Robert ; Gonzalez-Pena, Veronica ; Wilkinson, Mark R ; Hermida, Leandro C ; Davis, Sean ; Sioson, Edgar ; Pounds, Stanley ; Cao, Xueyuan ; Ries, Rhonda E ; Wang, Zhaoming ; Chen, Xiang ; Dong, Li ; Diskin, Sharon J ; Smith, Malcolm A ; Guidry Auvil, Jaime M ; Meltzer, Paul S ; Lau, Ching C ; Perlman, Elizabeth J ; Maris, John M ; Meshinchi, Soheil ; Hunger, Stephen P ; Gerhard, Daniela S ; Zhang, Jinghui

Nature (London), 2018-03, Vol.555 (7696), p.371-376 [Periódico revisado por pares]

England: Nature Publishing Group

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7
Germline Mutations in Predisposition Genes in Pediatric Cancer
Germline Mutations in Predisposition Genes in Pediatric Cancer
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Germline Mutations in Predisposition Genes in Pediatric Cancer

Zhang, Jinghui ; Walsh, Michael F ; Wu, Gang ; Edmonson, Michael N ; Gruber, Tanja A ; Easton, John ; Hedges, Dale ; Ma, Xiaotu ; Zhou, Xin ; Yergeau, Donald A ; Wilkinson, Mark R ; Vadodaria, Bhavin ; Chen, Xiang ; McGee, Rose B ; Hines-Dowell, Stacy ; Nuccio, Regina ; Quinn, Emily ; Shurtleff, Sheila A ; Rusch, Michael ; Patel, Aman ; Becksfort, Jared B ; Wang, Shuoguo ; Weaver, Meaghann S ; Ding, Li ; Mardis, Elaine R ; Wilson, Richard K ; Gajjar, Amar ; Ellison, David W ; Pappo, Alberto S ; Pui, Ching-Hon ; Nichols, Kim E ; Downing, James R

The New England journal of medicine, 2015-12, Vol.373 (24), p.2336-2346 [Periódico revisado por pares]

United States: Massachusetts Medical Society

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8
Inhibition of SF3B1 by molecules targeting the spliceosome results in massive aberrant exon skipping
Inhibition of SF3B1 by molecules targeting the spliceosome results in massive aberrant exon skipping
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Inhibition of SF3B1 by molecules targeting the spliceosome results in massive aberrant exon skipping

Wu, Gang ; Fan, Liying ; Edmonson, Michael N ; Shaw, Timothy ; Boggs, Kristy ; Easton, John ; Rusch, Michael C ; Webb, Thomas R ; Zhang, Jinghui ; Potter, Philip M

RNA (Cambridge), 2018-08, Vol.24 (8), p.1056-1066 [Periódico revisado por pares]

United States: Cold Spring Harbor Laboratory Press

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9
The landscape of somatic mutations in infant MLL-rearranged acute lymphoblastic leukemias
The landscape of somatic mutations in infant MLL-rearranged acute lymphoblastic leukemias
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The landscape of somatic mutations in infant MLL-rearranged acute lymphoblastic leukemias

Andersson, Anna K ; Ma, Jing ; Wang, Jianmin ; Chen, Xiang ; Gedman, Amanda Larson ; Dang, Jinjun ; Nakitandwe, Joy ; Holmfeldt, Linda ; Parker, Matthew ; Easton, John ; Huether, Robert ; Kriwacki, Richard ; Rusch, Michael ; Wu, Gang ; Li, Yongjin ; Mulder, Heather ; Raimondi, Susana ; Pounds, Stanley ; Kang, Guolian ; Shi, Lei ; Becksfort, Jared ; Gupta, Pankaj ; Payne-Turner, Debbie ; Vadodaria, Bhavin ; Boggs, Kristy ; Yergeau, Donald ; Manne, Jayanthi ; Song, Guangchun ; Edmonson, Michael ; Nagahawatte, Panduka ; Wei, Lei ; Cheng, Cheng ; Pei, Deqing ; Sutton, Rosemary ; Venn, Nicola C ; Chetcuti, Albert ; Rush, Amanda ; Catchpoole, Daniel ; Heldrup, Jesper ; Fioretos, Thoas ; Lu, Charles ; Ding, Li ; Pui, Ching-Hon ; Shurtleff, Sheila ; Mullighan, Charles G ; Mardis, Elaine R ; Wilson, Richard K ; Gruber, Tanja A ; Zhang, Jinghui ; Downing, James R

Nature genetics, 2015-04, Vol.47 (4), p.330-337 [Periódico revisado por pares]

United States: Nature Publishing Group

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10
Therapy-induced mutations drive the genomic landscape of relapsed acute lymphoblastic leukemia
Therapy-induced mutations drive the genomic landscape of relapsed acute lymphoblastic leukemia
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Therapy-induced mutations drive the genomic landscape of relapsed acute lymphoblastic leukemia

Li, Benshang ; Brady, Samuel W. ; Ma, Xiaotu ; Shen, Shuhong ; Zhang, Yingchi ; Li, Yongjin ; Szlachta, Karol ; Dong, Li ; Liu, Yu ; Yang, Fan ; Wang, Ningling ; Flasch, Diane A. ; Myers, Matthew A. ; Mulder, Heather L. ; Ding, Lixia ; Liu, Yanling ; Tian, Liqing ; Hagiwara, Kohei ; Xu, Ke ; Zhou, Xin ; Sioson, Edgar ; Wang, Tianyi ; Yang, Liu ; Zhao, Jie ; Zhang, Hui ; Shao, Ying ; Sun, Hongye ; Sun, Lele ; Cai, Jiaoyang ; Sun, Hui-Ying ; Lin, Ting-Nien ; Du, Lijuan ; Li, Hui ; Rusch, Michael ; Edmonson, Michael N. ; Easton, John ; Zhu, Xiaofan ; Zhang, Jingliao ; Cheng, Cheng ; Raphael, Benjamin J. ; Tang, Jingyan ; Downing, James R. ; Alexandrov, Ludmil B. ; Zhou, Bin-Bing S. ; Pui, Ching-Hon ; Yang, Jun J. ; Zhang, Jinghui

Blood, 2020-01, Vol.135 (1), p.41-55 [Periódico revisado por pares]

United States: Elsevier Inc

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