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The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
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The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update

Afgan, Enis ; Nekrutenko, Anton ; Grüning, Bjórn A ; Blankenberg, Daniel ; Goecks, Jeremy ; Schatz, Michael C ; Ostrovsky, Alexander E ; Mahmoud, Alexandru ; Lonie, Andrew J ; Syme, Anna ; Bretaudeau, Anthony ; Kumar, Anup ; Eschenlauer, Arthur C ; DeSanto, Assunta D ; Guerler, Aysam ; Serrano-Solano, Beatriz ; Batut, Bérénice ; Grüning, Björn A ; Langhorst, Bradley W ; Carr, Bridget ; Raubenolt, Bryan A ; Hyde, Cameron J ; Bromhead, Catherine J ; Barnett, Christopher B ; Royaux, Coline ; Gallardo, Cristóbal ; Fornika, Daniel J ; Baker, Dannon ; Bouvier, Dave ; Clements, Dave ; de Lima Morais, David A ; Tabernero, David Lopez ; Lariviere, Delphine ; Nasr, Engy ; Zambelli, Federico ; Heyl, Florian ; Psomopoulos, Fotis ; Coppens, Frederik ; Price, Gareth R ; Cuccuru, Gianmauro ; Corguillé, Gildas Le ; Von Kuster, Greg ; Akbulut, Gulsum Gudukbay ; Rasche, Helena ; Hotz, Hans-Rudolf ; Eguinoa, Ignacio ; Makunin, Igor ; Ranawaka, Isuru J ; Taylor, James P ; Joshi, Jayadev ; Hillman-Jackson, Jennifer ; Chilton, John M ; Kamali, Kaivan ; Suderman, Keith ; Poterlowicz, Krzysztof ; Yvan, Le Bras ; Lopez-Delisle, Lucille ; Sargent, Luke ; Bassetti, Madeline E ; Tangaro, Marco Antonio ; van den Beek, Marius ; Čech, Martin ; Bernt, Matthias ; Fahrner, Matthias ; Tekman, Mehmet ; Föll, Melanie C ; Crusoe, Michael R ; Roncoroni, Miguel ; Kucher, Natalie ; Coraor, Nate ; Stoler, Nicholas ; Rhodes, Nick ; Soranzo, Nicola ; Pinter, Niko ; Goonasekera, Nuwan A ; Moreno, Pablo A ; Videm, Pavankumar ; Melanie, Petera ; Mandreoli, Pietro ; Jagtap, Pratik D ; Gu, Qiang ; Weber, Ralf J M ; Lazarus, Ross ; Vorderman, Ruben H P ; Hiltemann, Saskia ; Golitsynskiy, Sergey ; Garg, Shilpa ; Bray, Simon A ; Gladman, Simon L ; Leo, Simone ; Mehta, Subina P ; Griffin, Timothy J ; Jalili, Vahid ; Yves, Vandenbrouck ; Wen, Victor ; Nagampalli, Vijay K ; Bacon, Wendi A ; de Koning, Willem ; Maier, Wolfgang ; Briggs, Peter J

Nucleic acids research, 2022-07, Vol.50 (W1), p.W345-W351 [Periódico revisado por pares]

England: Oxford University Press

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2
Dysbiotic salivary microbiota in dry mouth and primary Sjögren's syndrome patients
Dysbiotic salivary microbiota in dry mouth and primary Sjögren's syndrome patients
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Dysbiotic salivary microbiota in dry mouth and primary Sjögren's syndrome patients

Rusthen, S ; Kristoffersen, A K ; Young, A ; Galtung, H K ; Petrovski, B É ; Palm, Ø ; Enersen, M ; Jensen, J L Appel, Silke

PloS one, 2019-06, Vol.14 (6), p.e0218319-e0218319 [Periódico revisado por pares]

United States: Public Library of Science

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3
CRISPR screening using an expanded toolkit of autophagy reporters identifies TMEM41B as a novel autophagy factor
CRISPR screening using an expanded toolkit of autophagy reporters identifies TMEM41B as a novel autophagy factor
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CRISPR screening using an expanded toolkit of autophagy reporters identifies TMEM41B as a novel autophagy factor

Shoemaker, Christopher J ; Huang, Tina Q ; Weir, Nicholas R ; Polyakov, Nicole J ; Schultz, Sebastian W ; Denic, Vladimir Simonsen, Anne

PLoS Biology, 2019-04, Vol.17 (4), p.e2007044-e2007044 [Periódico revisado por pares]

United States: Public Library of Science

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4
JASPAR 2020: update of the open-access database of transcription factor binding profiles
JASPAR 2020: update of the open-access database of transcription factor binding profiles
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JASPAR 2020: update of the open-access database of transcription factor binding profiles

Fornes, Oriol ; Castro-Mondragon, Jaime A ; Khan, Aziz ; van der Lee, Robin ; Zhang, Xi ; Richmond, Phillip A ; Modi, Bhavi P ; Correard, Solenne ; Gheorghe, Marius ; Baranašić, Damir ; Santana-Garcia, Walter ; Tan, Ge ; Chèneby, Jeanne ; Ballester, Benoit ; Parcy, François ; Sandelin, Albin ; Lenhard, Boris ; Wasserman, Wyeth W ; Mathelier, Anthony

Nucleic acids research, 2020-01, Vol.48 (D1), p.D87-D92 [Periódico revisado por pares]

England: Oxford University Press

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5
The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing
The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing
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The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing

Keeling, Patrick J ; Burki, Fabien ; Wilcox, Heather M ; Allam, Bassem ; Allen, Eric E ; Amaral-Zettler, Linda A ; Armbrust, E Virginia ; Archibald, John M ; Bharti, Arvind K ; Bell, Callum J ; Beszteri, Bank ; Bidle, Kay D ; Cameron, Connor T ; Campbell, Lisa ; Caron, David A ; Cattolico, Rose Ann ; Collier, Jackie L ; Coyne, Kathryn ; Davy, Simon K ; Deschamps, Phillipe ; Dyhrman, Sonya T ; Edvardsen, Bente ; Gates, Ruth D ; Gobler, Christopher J ; Greenwood, Spencer J ; Guida, Stephanie M ; Jacobi, Jennifer L ; Jakobsen, Kjetill S ; James, Erick R ; Jenkins, Bethany ; John, Uwe ; Johnson, Matthew D ; Juhl, Andrew R ; Kamp, Anja ; Katz, Laura A ; Kiene, Ronald ; Kudryavtsev, Alexander ; Leander, Brian S ; Lin, Senjie ; Lovejoy, Connie ; Lynn, Denis ; Marchetti, Adrian ; McManus, George ; Nedelcu, Aurora M ; Menden-Deuer, Susanne ; Miceli, Cristina ; Mock, Thomas ; Montresor, Marina ; Moran, Mary Ann ; Murray, Shauna ; Nadathur, Govind ; Nagai, Satoshi ; Ngam, Peter B ; Palenik, Brian ; Pawlowski, Jan ; Petroni, Giulio ; Piganeau, Gwenael ; Posewitz, Matthew C ; Rengefors, Karin ; Romano, Giovanna ; Rumpho, Mary E ; Rynearson, Tatiana ; Schilling, Kelly B ; Schroeder, Declan C ; Simpson, Alastair G B ; Slamovits, Claudio H ; Smith, David R ; Smith, G Jason ; Smith, Sarah R ; Sosik, Heidi M ; Stief, Peter ; Theriot, Edward ; Twary, Scott N ; Umale, Pooja E ; Vaulot, Daniel ; Wawrik, Boris ; Wheeler, Glen L ; Wilson, William H ; Xu, Yan ; Zingone, Adriana ; Worden, Alexandra Z Roberts, Roland G.

PLoS Biology, 2014-06, Vol.12 (6), p.e1001889 [Periódico revisado por pares]

United States: Public Library of Science

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6
The evolution and changing ecology of the African hominid oral microbiome
The evolution and changing ecology of the African hominid oral microbiome
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The evolution and changing ecology of the African hominid oral microbiome

Fellows Yates, James A ; Velsko, Irina M ; Aron, Franziska ; Posth, Cosimo ; Hofman, Courtney A ; Austin, Rita M ; Parker, Cody E ; Mann, Allison E ; Nägele, Kathrin ; Arthur, Kathryn Weedman ; Arthur, John W ; Bauer, Catherine C ; Crevecoeur, Isabelle ; Cupillard, Christophe ; Curtis, Matthew C ; Dalén, Love ; Díaz-Zorita Bonilla, Marta ; Díez Fernández-Lomana, J Carlos ; Drucker, Dorothée G ; Escribano Escrivá, Elena ; Francken, Michael ; Gibbon, Victoria E ; González Morales, Manuel R ; Grande Mateu, Ana ; Harvati, Katerina ; Henry, Amanda G ; Humphrey, Louise ; Menéndez, Mario ; Mihailović, Dušan ; Peresani, Marco ; Rodríguez Moroder, Sofía ; Roksandic, Mirjana ; Rougier, Hélène ; Sázelová, Sandra ; Stock, Jay T ; Straus, Lawrence Guy ; Svoboda, Jiří ; Teßmann, Barbara ; Walker, Michael J ; Power, Robert C ; Lewis, Cecil M ; Sankaranarayanan, Krithivasan ; Guschanski, Katerina ; Wrangham, Richard W ; Dewhirst, Floyd E ; Salazar-García, Domingo C ; Krause, Johannes ; Herbig, Alexander ; Warinner, Christina

Proceedings of the National Academy of Sciences - PNAS, 2021-05, Vol.118 (20), p.1 [Periódico revisado por pares]

United States: National Academy of Sciences

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7
Antibiotic resistance: turning evolutionary principles into clinical reality
Antibiotic resistance: turning evolutionary principles into clinical reality
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Antibiotic resistance: turning evolutionary principles into clinical reality

Andersson, Dan I ; Balaban, Nathalie Q ; Baquero, Fernando ; Courvalin, Patrice ; Glaser, Philippe ; Gophna, Uri ; Kishony, Roy ; Molin, Søren ; Tønjum, Tone

FEMS microbiology reviews, 2020-03, Vol.44 (2), p.171-188 [Periódico revisado por pares]

England: Oxford University Press

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8
Dissemination of cephalosporin resistance genes between Escherichia coli strains from farm animals and humans by specific plasmid lineages
Dissemination of cephalosporin resistance genes between Escherichia coli strains from farm animals and humans by specific plasmid lineages
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Dissemination of cephalosporin resistance genes between Escherichia coli strains from farm animals and humans by specific plasmid lineages

de Been, Mark ; Lanza, Val F ; de Toro, María ; Scharringa, Jelle ; Dohmen, Wietske ; Du, Yu ; Hu, Juan ; Lei, Ying ; Li, Ning ; Tooming-Klunderud, Ave ; Heederik, Dick J J ; Fluit, Ad C ; Bonten, Marc J M ; Willems, Rob J L ; de la Cruz, Fernando ; van Schaik, Willem Richardson, Paul M.

PLoS genetics, 2014-12, Vol.10 (12), p.e1004776-e1004776 [Periódico revisado por pares]

United States: Public Library of Science (PLoS)

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9
Metabolic enzyme cost explains variable trade-offs between microbial growth rate and yield
Metabolic enzyme cost explains variable trade-offs between microbial growth rate and yield
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Metabolic enzyme cost explains variable trade-offs between microbial growth rate and yield

Wortel, Meike T ; Noor, Elad ; Ferris, Michael ; Bruggeman, Frank J ; Liebermeister, Wolfram Maranas, Costas D.

PLoS computational biology, 2018-02, Vol.14 (2), p.e1006010-e1006010 [Periódico revisado por pares]

United States: Public Library of Science

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10
The UNITE database for molecular identification and taxonomic communication of fungi and other eukaryotes: sequences, taxa and classifications reconsidered
The UNITE database for molecular identification and taxonomic communication of fungi and other eukaryotes: sequences, taxa and classifications reconsidered
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The UNITE database for molecular identification and taxonomic communication of fungi and other eukaryotes: sequences, taxa and classifications reconsidered

Abarenkov, Kessy ; Nilsson, R Henrik ; Larsson, Karl-Henrik ; Taylor, Andy F S ; May, Tom W ; Frøslev, Tobias Guldberg ; Pawlowska, Julia ; Lindahl, Björn ; Põldmaa, Kadri ; Truong, Camille ; Vu, Duong ; Hosoya, Tsuyoshi ; Niskanen, Tuula ; Piirmann, Timo ; Ivanov, Filipp ; Zirk, Allan ; Peterson, Marko ; Cheeke, Tanya E ; Ishigami, Yui ; Jansson, Arnold Tobias ; Jeppesen, Thomas Stjernegaard ; Kristiansson, Erik ; Mikryukov, Vladimir ; Miller, Joseph T ; Oono, Ryoko ; Ossandon, Francisco J ; Paupério, Joana ; Saar, Irja ; Schigel, Dmitry ; Suija, Ave ; Tedersoo, Leho ; Kõljalg, Urmas

Nucleic acids research, 2024, Vol.52 (D1), p.D791-D797 [Periódico revisado por pares]

England: Oxford University Press

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