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Ultra-deep, long-read nanopore sequencing of mock microbial community standards
Ultra-deep, long-read nanopore sequencing of mock microbial community standards
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Ultra-deep, long-read nanopore sequencing of mock microbial community standards

Nicholls, Samuel M ; Quick, Joshua C ; Tang, Shuiquan ; Loman, Nicholas J

Gigascience, 2019-05, Vol.8 (5) [Periódico revisado por pares]

United States: Oxford University Press

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2
Binning metagenomic contigs by coverage and composition
Binning metagenomic contigs by coverage and composition
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Binning metagenomic contigs by coverage and composition

Alneberg, Johannes ; Bjarnason, Brynjar Smári ; de Bruijn, Ino ; Schirmer, Melanie ; Quick, Joshua ; Ijaz, Umer Z ; Lahti, Leo ; Loman, Nicholas J ; Andersson, Anders F ; Quince, Christopher

Nature methods, 2014-11, Vol.11 (11), p.1144-1146 [Periódico revisado por pares]

United States: Nature Publishing Group

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3
An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar
An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar
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An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar

Grubaugh, Nathan D ; Gangavarapu, Karthik ; Quick, Joshua ; Matteson, Nathaniel L ; De Jesus, Jaqueline Goes ; Main, Bradley J ; Tan, Amanda L ; Paul, Lauren M ; Brackney, Doug E ; Grewal, Saran ; Gurfield, Nikos ; Van Rompay, Koen K A ; Isern, Sharon ; Michael, Scott F ; Coffey, Lark L ; Loman, Nicholas J ; Andersen, Kristian G

Genome Biology, 2019-01, Vol.20 (1), p.8-19, Article 8 [Periódico revisado por pares]

England: BioMed Central

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4
Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples
Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples
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Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples

Quick, Joshua ; Grubaugh, Nathan D ; Pullan, Steven T ; Claro, Ingra M ; Smith, Andrew D ; Gangavarapu, Karthik ; Oliveira, Glenn ; Robles-Sikisaka, Refugio ; Rogers, Thomas F ; Beutler, Nathan A ; Burton, Dennis R ; Lewis-Ximenez, Lia Laura ; de Jesus, Jaqueline Goes ; Giovanetti, Marta ; Hill, Sarah C ; Black, Allison ; Bedford, Trevor ; Carroll, Miles W ; Nunes, Marcio ; Alcantara, Jr, Luiz Carlos ; Sabino, Ester C ; Baylis, Sally A ; Faria, Nuno R ; Loose, Matthew ; Simpson, Jared T ; Pybus, Oliver G ; Andersen, Kristian G ; Loman, Nicholas J

Nature protocols, 2017-06, Vol.12 (6), p.1261-1276 [Periódico revisado por pares]

England: Nature Publishing Group

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5
Coast-to-Coast Spread of SARS-CoV-2 during the Early Epidemic in the United States
Coast-to-Coast Spread of SARS-CoV-2 during the Early Epidemic in the United States
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Coast-to-Coast Spread of SARS-CoV-2 during the Early Epidemic in the United States

Fauver, Joseph R. ; Petrone, Mary E. ; Hodcroft, Emma B. ; Shioda, Kayoko ; Ehrlich, Hanna Y. ; Watts, Alexander G. ; Vogels, Chantal B.F. ; Brito, Anderson F. ; Alpert, Tara ; Muyombwe, Anthony ; Razeq, Jafar ; Downing, Randy ; Cheemarla, Nagarjuna R. ; Wyllie, Anne L. ; Kalinich, Chaney C. ; Ott, Isabel M. ; Quick, Joshua ; Loman, Nicholas J. ; Neugebauer, Karla M. ; Greninger, Alexander L. ; Jerome, Keith R. ; Roychoudhury, Pavitra ; Xie, Hong ; Shrestha, Lasata ; Huang, Meei-Li ; Pitzer, Virginia E. ; Iwasaki, Akiko ; Omer, Saad B. ; Khan, Kamran ; Bogoch, Isaac I. ; Martinello, Richard A. ; Foxman, Ellen F. ; Landry, Marie L. ; Neher, Richard A. ; Ko, Albert I. ; Grubaugh, Nathan D.

Cell, 2020-05, Vol.181 (5), p.990-996.e5 [Periódico revisado por pares]

United States: Elsevier Inc

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6
Resurgence of Ebola virus in 2021 in Guinea suggests a new paradigm for outbreaks
Resurgence of Ebola virus in 2021 in Guinea suggests a new paradigm for outbreaks
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Resurgence of Ebola virus in 2021 in Guinea suggests a new paradigm for outbreaks

Keita, Alpha Kabinet ; Koundouno, Fara R ; Faye, Martin ; Düx, Ariane ; Hinzmann, Julia ; Diallo, Haby ; Ayouba, Ahidjo ; Le Marcis, Frederic ; Soropogui, Barré ; Ifono, Kékoura ; Diagne, Moussa M ; Sow, Mamadou S ; Bore, Joseph A ; Calvignac-Spencer, Sebastien ; Vidal, Nicole ; Camara, Jacob ; Keita, Mamadou B ; Renevey, Annick ; Diallo, Amadou ; Soumah, Abdoul K ; Millimono, Saa L ; Mari-Saez, Almudena ; Diop, Mamadou ; Doré, Ahmadou ; Soumah, Fodé Y ; Kourouma, Kaka ; Vielle, Nathalie J ; Loucoubar, Cheikh ; Camara, Ibrahima ; Kourouma, Karifa ; Annibaldis, Giuditta ; Bah, Assaïtou ; Thielebein, Anke ; Pahlmann, Meike ; Pullan, Steven T ; Carroll, Miles W ; Quick, Joshua ; Formenty, Pierre ; Legand, Anais ; Pietro, Karla ; Wiley, Michael R ; Tordo, Noel ; Peyrefitte, Christophe ; McCrone, John T ; Rambaut, Andrew ; Sidibé, Youssouf ; Barry, Mamadou D ; Kourouma, Madeleine ; Saouromou, Cé D ; Condé, Mamadou ; Baldé, Moussa ; Povogui, Moriba ; Keita, Sakoba ; Diakite, Mandiou ; Bah, Mamadou S ; Sidibe, Amadou ; Diakite, Dembo ; Sako, Fodé B ; Traore, Fodé A ; Ki-Zerbo, Georges A ; Lemey, Philippe ; Günther, Stephan ; Kafetzopoulou, Liana E ; Sall, Amadou A ; Delaporte, Eric ; Duraffour, Sophie ; Faye, Ousmane ; Leendertz, Fabian H ; Peeters, Martine ; Toure, Abdoulaye ; Magassouba, N' Faly

Nature (London), 2021-09, Vol.597 (7877), p.539-543 [Periódico revisado por pares]

England: Nature Publishing Group

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7
Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella
Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella
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Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella

Quick, Joshua ; Ashton, Philip ; Calus, Szymon ; Chatt, Carole ; Gossain, Savita ; Hawker, Jeremy ; Nair, Satheesh ; Neal, Keith ; Nye, Kathy ; Peters, Tansy ; De Pinna, Elizabeth ; Robinson, Esther ; Struthers, Keith ; Webber, Mark ; Catto, Andrew ; Dallman, Timothy J ; Hawkey, Peter ; Loman, Nicholas J

Genome Biology, 2015-05, Vol.16 (1), p.114-114, Article 114 [Periódico revisado por pares]

England: BioMed Central

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8
Automated Educative Nudges to Reduce Missed Assignments in College
Automated Educative Nudges to Reduce Missed Assignments in College
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Automated Educative Nudges to Reduce Missed Assignments in College

Motz, Benjamin A. ; Mallon, Matthew G. ; Quick, Joshua D.

IEEE transactions on learning technologies, 2021-04, Vol.14 (2), p.189-200 [Periódico revisado por pares]

Piscataway: IEEE

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9
A Pandemic of Busywork: Increased Online Coursework Following the Transition to Remote Instruction is Associated with Reduced Academic Achievement
A Pandemic of Busywork: Increased Online Coursework Following the Transition to Remote Instruction is Associated with Reduced Academic Achievement
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A Pandemic of Busywork: Increased Online Coursework Following the Transition to Remote Instruction is Associated with Reduced Academic Achievement

Motz, Benjamin A ; Quick, Joshua D ; Wernert, Julie A ; Miles, Tonya A

Online learning (Newburyport, Mass.), 2021-03, Vol.25 (1), p.70 [Periódico revisado por pares]

Online Learning Consortium

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10
Importation and early local transmission of COVID-19 in Brazil, 2020
Importation and early local transmission of COVID-19 in Brazil, 2020
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Importation and early local transmission of COVID-19 in Brazil, 2020

Jesus, Jaqueline Goes de ; Sacchi, Claudio ; Candido, Darlan da Silva ; Claro, Ingra Morales ; Sales, Flávia Cristina Silva ; Manuli, Erika Regina ; Silva, Daniela Bernardes Borges da ; Paiva, Terezinha Maria de ; Pinho, Margarete Aparecida Benega ; Santos, Katia Correa de Oliveira ; Hill, Sarah Catherine ; Aguiar, Renato Santana ; Romero, Filipe ; Santos, Fabiana Cristina Pereira Dos ; Gonçalves, Claudia Regina ; Timenetsky, Maria do Carmo ; Quick, Joshua ; Croda, Julio Henrique Rosa ; Oliveira, Wanderson de ; Rambaut, Andrew ; Pybus, Oliver G. ; Loman, Nicholas J. ; Sabino, Ester Cerdeira ; Faria, Nuno Rodrigues

Revista do Instituto de Medicina Tropical de São Paulo, 2020-01, Vol.62, p.e30-5 [Periódico revisado por pares]

Brazil: Instituto de Medicina Tropical de Sao Paulo

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