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1
Machine learning-assisted identification of bioindicators predicts medium-chain carboxylate production performance of an anaerobic mixed culture
Machine learning-assisted identification of bioindicators predicts medium-chain carboxylate production performance of an anaerobic mixed culture
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Machine learning-assisted identification of bioindicators predicts medium-chain carboxylate production performance of an anaerobic mixed culture

Bin Liu Heike Sträuber; João Pedro Saraiva; Hauke Harms; Sandra Godinho Silva; Jonas Coelho Kasmanas; Sabine Kleinsteuber; Ulisses Nunes da Rocha

Microbiome London v. 10, p. 1-21, 2022

London 2022

Localização: ICMC - Inst. Ciên. Mat. Computação    (PROD-3073873 )(Acessar)

2
Explainable machine learning for breast cancer diagnosis
Explainable machine learning for breast cancer diagnosis
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Explainable machine learning for breast cancer diagnosis

Tamires Brito-Sarracino Moises Rocha dos Santos; Eric Freire Antunes; Iury Batista de Andrade Santos; Jonas Coelho Kasmanas; André Carlos Ponce de Leon Ferreira de Carvalho; Brazilian Conference on Intelligent Systems - BRACIS (8. 2019 Salvador)

Proceedings Piscataway : IEEE, 2019

Piscataway IEEE 2019

Localização: ICMC - Inst. Ciên. Mat. Computação    (PROD-2979505 )(Acessar)

3
HumanMetagenomeDB a public repository of curated and standardized metadata for human metagenomes
HumanMetagenomeDB a public repository of curated and standardized metadata for human metagenomes
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HumanMetagenomeDB a public repository of curated and standardized metadata for human metagenomes

Jonas Coelho Kasmanas Alexander Bartholomäus; Felipe Borim Corrêa; Tamara Tal; Nico Jehmlich; Gunda Herberth; Martin von Bergen; Peter F Stadler; André Carlos Ponce de Leon Ferreira de Carvalho; Ulisses Nunes da Rocha

Nucleic Acids Research Oxford : Oxford University Press v. 49, n. D1, p. D743–D750, Jan. 2021

Oxford 2021

Localização: ICMC - Inst. Ciên. Mat. Computação    (PROD-3016468 )(Acessar)

4
OrtSuite from genomes to prediction of microbial interactions within targeted ecosystem processes
OrtSuite from genomes to prediction of microbial interactions within targeted ecosystem processes
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OrtSuite from genomes to prediction of microbial interactions within targeted ecosystem processes

João Pedro Saraiva Alexander Bartholomäus; René Kallies; Marta Gomes; Marcos Bicalho; Jonas Coelho Kasmanas; Carsten Vogt; Antonis Chatzinotas; Peter F Stadler; Oscar Dias; Ulisses Nunes da Rocha

Life Science Alliance Cold Spring Harbor v. 4, n. 12, p. 1-14, 2021

Cold Spring Harbor 2021

Localização: ICMC - Inst. Ciên. Mat. Computação    (PROD-3046189 )(Acessar)

5
MarineMetagenomeDB a public repository for curated and standardized metadata for marine metagenomes
MarineMetagenomeDB a public repository for curated and standardized metadata for marine metagenomes
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MarineMetagenomeDB a public repository for curated and standardized metadata for marine metagenomes

Muhammad Kabiru Nata'ala Anderson Paulo Avila Santos; Jonas Coelho Kasmanas; Alexander Bartholomäus; João Pedro Saraiva; Sandra Godinho Silva; Tina Keller-Costa; Rodrigo Costa; Newton Carlos Marcial Gomes; André Carlos Ponce de Leon Ferreira de Carvalho; Peter F Stadler; Danilo Sipoli Sanches; Ulisses Nunes da Rocha

Environmental Microbiome London v. 17, p. 1-10, 2022

London 2022

Localização: ICMC - Inst. Ciên. Mat. Computação    (PROD-3108433 )(Acessar)

6
The AnimalAssociatedMetagenomeDB reveals a bias towards livestock and developed countries and blind spots in functional-potential studies of animal-associated microbiomes
The AnimalAssociatedMetagenomeDB reveals a bias towards livestock and developed countries and blind spots in functional-potential studies of animal-associated microbiomes
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The AnimalAssociatedMetagenomeDB reveals a bias towards livestock and developed countries and blind spots in functional-potential studies of animal-associated microbiomes

Anderson Paulo Avila Santos Muhammad Kabiru Nata'ala; Jonas Coelho Kasmanas; Alexander Bartholomäus; Tina Keller-Costa; Stephanie D Jurburg; Tamara Tal; Amélia Camarinha-Silva; João Pedro Saraiva; André Carlos Ponce de Leon Ferreira de Carvalho; Peter F Stadler; Danilo Sipoli Sanches; Ulisses Nunes da Rocha

Animal Microbiome London v. 5, p. 1-13, 2023

London 2023

Localização: ICMC - Inst. Ciên. Mat. Computação    (PROD-3160952 )(Acessar)

7
MuDoGeR multi-domain genome recovery from metagenomes made easy
MuDoGeR multi-domain genome recovery from metagenomes made easy
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MuDoGeR multi-domain genome recovery from metagenomes made easy

Ulisses Nunes da Rocha Jonas Coelho Kasmanas; René Kallies; João Pedro Saraiva; Rodolfo Brizola Toscan; Polonca Štefanič; Marcos Fleming Bicalho; Felipe Borim Corrêa; Merve Nida Baştürk; Efthymios Fousekis; Luiz Miguel Viana Barbosa; Julia Plewka; Alexander J Probst; Petr Baldrian; Peter F Stadler; CLUE-TERRA Consortium

Molecular Ecology Resources Hoboken v. 24, n. 2, p. 1-12, Feb. 2024

Hoboken 2024

Localização: ICMC - Inst. Ciên. Mat. Computação    (PROD-3169214 )(Acessar)

8
MuDoGeR: Multi‐Domain Genome recovery from metagenomes made easy
MuDoGeR: Multi‐Domain Genome recovery from metagenomes made easy
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MuDoGeR: Multi‐Domain Genome recovery from metagenomes made easy

Rocha, Ulisses ; Coelho Kasmanas, Jonas ; Kallies, René ; Saraiva, Joao Pedro ; Toscan, Rodolfo Brizola ; Štefanič, Polonca ; Bicalho, Marcos Fleming ; Borim Correa, Felipe ; Baştürk, Merve Nida ; Fousekis, Efthymios ; Viana Barbosa, Luiz Miguel ; Plewka, Julia ; Probst, Alexander J. ; Baldrian, Petr ; Stadler, Peter F. ; Bartholomäus, Alexander ; Rosado, Alexandre Soares ; Fiore‐Donno, Ana‐Maria ; Leon Ferreira de Carvalho, André Carlos Ponce ; Gubry‐Rangin, Cecile ; Machado, Daniel ; Sanches, Danilo S. ; Wagner, Dirk ; Berg, Gabriele ; Mulec, Ines Mundic ; Muehe, Marie ; Bonkowski, Michael ; Gomes, Newton ; Peixoto, Raquel ; Costa, Rodrigo ; Kleinsteuber, Sabine ; Gribaldo, Simonetta ; Costa, Tina Keller ; Pellizari, Vivian

Molecular ecology resources, 2024-02, Vol.24 (2), p.e13904-n/a [Periódico revisado por pares]

England: Wiley Subscription Services, Inc

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9
MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes
MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes
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MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes

Nata'ala, Muhammad Kabiru ; Avila Santos, Anderson P ; Coelho Kasmanas, Jonas ; Bartholomäus, Alexander ; Saraiva, João Pedro ; Godinho Silva, Sandra ; Keller-Costa, Tina ; Costa, Rodrigo ; Gomes, Newton C. M ; Ponce de Leon Ferreira de Carvalho, André Carlos ; Stadler, Peter F ; Sipoli Sanches, Danilo ; Nunes da Rocha, Ulisses

Environmental microbiome, 2022-11, Vol.17 (1), p.1-57, Article 57 [Periódico revisado por pares]

London: BioMed Central Ltd

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10
The fate of sulfonamide resistance genes and anthropogenic pollution marker intI1 after discharge of wastewater into a pristine river stream
The fate of sulfonamide resistance genes and anthropogenic pollution marker intI1 after discharge of wastewater into a pristine river stream
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The fate of sulfonamide resistance genes and anthropogenic pollution marker intI1 after discharge of wastewater into a pristine river stream

Haenelt, Sarah ; Wang, Gangan ; Kasmanas, Jonas Coelho ; Musat, Florin ; Richnow, Hans Hermann ; da Rocha, Ulisses Nunes ; Müller, Jochen A ; Musat, Niculina

Frontiers in microbiology, 2023-01, Vol.14, p.1058350-1058350 [Periódico revisado por pares]

Switzerland: Frontiers Media S.A

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