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Germline and somatic variant identification using BGISEQ-500 and HiSeq X Ten whole genome sequencing
Germline and somatic variant identification using BGISEQ-500 and HiSeq X Ten whole genome sequencing
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Germline and somatic variant identification using BGISEQ-500 and HiSeq X Ten whole genome sequencing

Patch, Ann-Marie ; Nones, Katia ; Kazakoff, Stephen H ; Newell, Felicity ; Wood, Scott ; Leonard, Conrad ; Holmes, Oliver ; Xu, Qinying ; Addala, Venkateswar ; Creaney, Jenette ; Robinson, Bruce W ; Fu, Shujin ; Geng, Chunyu ; Li, Tong ; Zhang, Wenwei ; Liang, Xinming ; Rao, Junhua ; Wang, Jiahao ; Tian, Mingyu ; Zhao, Yonggang ; Teng, Fei ; Gou, Honglan ; Yang, Bicheng ; Jiang, Hui ; Mu, Feng ; Pearson, John V ; Waddell, Nicola Galli, Alvaro

PloS one, 2018-01, Vol.13 (1), p.e0190264-e0190264 [Periódico revisado por pares]

United States: Public Library of Science

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2
Capturing the biofuel wellhead and powerhouse: the chloroplast and mitochondrial genomes of the leguminous feedstock tree Pongamia pinnata
Capturing the biofuel wellhead and powerhouse: the chloroplast and mitochondrial genomes of the leguminous feedstock tree Pongamia pinnata
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Capturing the biofuel wellhead and powerhouse: the chloroplast and mitochondrial genomes of the leguminous feedstock tree Pongamia pinnata

Kazakoff, Stephen H ; Imelfort, Michael ; Edwards, David ; Koehorst, Jasper ; Biswas, Bandana ; Batley, Jacqueline ; Scott, Paul T ; Gresshoff, Peter M Badger, Jonathan H.

PloS one, 2012-12, Vol.7 (12), p.e51687-e51687 [Periódico revisado por pares]

United States: Public Library of Science

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3
Injection site vaccinology of a recombinant vaccinia-based vector reveals diverse innate immune signatures
Injection site vaccinology of a recombinant vaccinia-based vector reveals diverse innate immune signatures
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Injection site vaccinology of a recombinant vaccinia-based vector reveals diverse innate immune signatures

Hazlewood, Jessamine E ; Dumenil, Troy ; Le, Thuy T ; Slonchak, Andrii ; Kazakoff, Stephen H ; Patch, Ann-Marie ; Gray, Lesley-Ann ; Howley, Paul M ; Liu, Liang ; Hayball, John D ; Yan, Kexin ; Rawle, Daniel J ; Prow, Natalie A ; Suhrbier, Andreas McFadden, Grant

PLoS pathogens, 2021-01, Vol.17 (1), p.e1009215 [Periódico revisado por pares]

United States: Public Library of Science

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4
Multiomic profiling of checkpoint inhibitor-treated melanoma: Identifying predictors of response and resistance, and markers of biological discordance
Multiomic profiling of checkpoint inhibitor-treated melanoma: Identifying predictors of response and resistance, and markers of biological discordance
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Multiomic profiling of checkpoint inhibitor-treated melanoma: Identifying predictors of response and resistance, and markers of biological discordance

Newell, Felicity ; Pires da Silva, Ines ; Johansson, Peter A. ; Menzies, Alexander M. ; Wilmott, James S. ; Addala, Venkateswar ; Carlino, Matteo S. ; Rizos, Helen ; Nones, Katia ; Edwards, Jarem J. ; Lakis, Vanessa ; Kazakoff, Stephen H. ; Mukhopadhyay, Pamela ; Ferguson, Peter M. ; Leonard, Conrad ; Koufariotis, Lambros T. ; Wood, Scott ; Blank, Christian U. ; Thompson, John F. ; Spillane, Andrew J. ; Saw, Robyn P.M. ; Shannon, Kerwin F. ; Pearson, John V. ; Mann, Graham J. ; Hayward, Nicholas K. ; Scolyer, Richard A. ; Waddell, Nicola ; Long, Georgina V.

Cancer cell, 2022-01, Vol.40 (1), p.88-102.e7 [Periódico revisado por pares]

United States: Elsevier Inc

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5
A plugin for the Ensembl Variant Effect Predictor that uses MaxEntScan to predict variant spliceogenicity
A plugin for the Ensembl Variant Effect Predictor that uses MaxEntScan to predict variant spliceogenicity
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A plugin for the Ensembl Variant Effect Predictor that uses MaxEntScan to predict variant spliceogenicity

Shamsani, Jannah ; Kazakoff, Stephen H ; Armean, Irina M ; McLaren, Will ; Parsons, Michael T ; Thompson, Bryony A ; O'Mara, Tracy A ; Hunt, Sarah E ; Waddell, Nicola ; Spurdle, Amanda B Berger, Bonnie

Bioinformatics (Oxford, England), 2019-07, Vol.35 (13), p.2315-2317 [Periódico revisado por pares]

England: Oxford University Press

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6
Phenotypic and molecular dissection of metaplastic breast cancer and the prognostic implications
Phenotypic and molecular dissection of metaplastic breast cancer and the prognostic implications
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Phenotypic and molecular dissection of metaplastic breast cancer and the prognostic implications

McCart Reed, Amy Ellen ; Kalaw, Emarene ; Nones, Katia ; Bettington, Mark ; Lim, Malcolm ; Bennett, James ; Johnstone, Kate ; Kutasovic, Jamie Rose ; Saunus, Jodi Marie ; Kazakoff, Stephen ; Xu, Qinying ; Wood, Scott ; Holmes, Oliver ; Leonard, Conrad ; Reid, Lynne Estelle ; Black, Debra ; Niland, Colleen ; Ferguson, Kaltin ; Gresshoff, Irma ; Raghavendra, Ashwini ; Harvey, Kate ; Cooper, Caroline ; Liu, Cheng ; Kalinowski, Lauren ; Reid, Andrew Scott ; Davidson, Morgan ; Pearson, John V ; Pathmanathan, Nirmala ; Tse, Gary ; Papadimos, David ; Pathmanathan, Rajadurai ; Harris, Gavin ; Yamaguchi, Rin ; Tan, Puay Hoon ; Fox, Stephen B ; O'Toole, Sandra A ; Simpson, Peter Thomas ; Waddell, Nicola ; Lakhani, Sunil R

The Journal of pathology, 2019-02, Vol.247 (2), p.214-227 [Periódico revisado por pares]

Chichester, UK: John Wiley & Sons, Ltd

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7
Genomic catastrophes frequently arise in esophageal adenocarcinoma and drive tumorigenesis
Genomic catastrophes frequently arise in esophageal adenocarcinoma and drive tumorigenesis
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Genomic catastrophes frequently arise in esophageal adenocarcinoma and drive tumorigenesis

Nones, Katia ; Waddell, Nicola ; Wayte, Nicci ; Patch, Ann-Marie ; Bailey, Peter ; Newell, Felicity ; Holmes, Oliver ; Fink, J Lynn ; Quinn, Michael C J ; Tang, Yue Hang ; Lampe, Guy ; Quek, Kelly ; Loffler, Kelly A ; Manning, Suzanne ; Idrisoglu, Senel ; Miller, David ; Xu, Qinying ; Waddell, Nick ; Wilson, Peter J ; Bruxner, Timothy J C ; Christ, Angelika N ; Harliwong, Ivon ; Nourse, Craig ; Nourbakhsh, Ehsan ; Anderson, Matthew ; Kazakoff, Stephen ; Leonard, Conrad ; Wood, Scott ; Simpson, Peter T ; Reid, Lynne E ; Krause, Lutz ; Hussey, Damian J ; Watson, David I ; Lord, Reginald V ; Nancarrow, Derek ; Phillips, Wayne A ; Gotley, David ; Smithers, B Mark ; Whiteman, David C ; Hayward, Nicholas K ; Campbell, Peter J ; Pearson, John V ; Grimmond, Sean M ; Barbour, Andrew P

Nature communications, 2014-10, Vol.5 (1), p.5224-5224, Article 5224 [Periódico revisado por pares]

England: Nature Publishing Group

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8
Molecular Genomic Profiling of Melanocytic Nevi
Molecular Genomic Profiling of Melanocytic Nevi
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Molecular Genomic Profiling of Melanocytic Nevi

Colebatch, Andrew J. ; Ferguson, Peter ; Newell, Felicity ; Kazakoff, Stephen H. ; Witkowski, Tom ; Dobrovic, Alexander ; Johansson, Peter A. ; Saw, Robyn P.M. ; Stretch, Jonathan R. ; McArthur, Grant A. ; Long, Georgina V. ; Thompson, John F. ; Pearson, John V. ; Mann, Graham J. ; Hayward, Nicholas K. ; Waddell, Nicola ; Scolyer, Richard A. ; Wilmott, James S.

Journal of investigative dermatology, 2019-08, Vol.139 (8), p.1762-1768 [Periódico revisado por pares]

United States: Elsevier Inc

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9
Combined Inhibition of G9a and EZH2 Suppresses Tumor Growth via Synergistic Induction of IL24-Mediated Apoptosis
Combined Inhibition of G9a and EZH2 Suppresses Tumor Growth via Synergistic Induction of IL24-Mediated Apoptosis
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Combined Inhibition of G9a and EZH2 Suppresses Tumor Growth via Synergistic Induction of IL24-Mediated Apoptosis

Casciello, Francesco ; Kelly, Gregory M ; Ramarao-Milne, Priya ; Kamal, Nabilah ; Stewart, Teneale A ; Mukhopadhyay, Pamela ; Kazakoff, Stephen H ; Miranda, Mariska ; Kim, Dorim ; Davis, Felicity M ; Hayward, Nicholas K ; Vertino, Paula M ; Waddell, Nicola ; Gannon, Frank ; Lee, Jason S

Cancer research (Chicago, Ill.), 2022-04, Vol.82 (7), p.1208-1221 [Periódico revisado por pares]

United States

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10
Comprehensive genomic and tumour immune profiling reveals potential therapeutic targets in malignant pleural mesothelioma
Comprehensive genomic and tumour immune profiling reveals potential therapeutic targets in malignant pleural mesothelioma
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Comprehensive genomic and tumour immune profiling reveals potential therapeutic targets in malignant pleural mesothelioma

Creaney, Jenette ; Patch, Ann-Marie ; Addala, Venkateswar ; Sneddon, Sophie A ; Nones, Katia ; Dick, Ian M ; Lee, Y C Gary ; Newell, Felicity ; Rouse, Ebony J ; Naeini, Marjan M ; Kondrashova, Olga ; Lakis, Vanessa ; Nakas, Apostolos ; Waller, David ; Sharkey, Annabel ; Mukhopadhyay, Pamela ; Kazakoff, Stephen H ; Koufariotis, Lambros T ; Davidson, Aimee L ; Ramarao-Milne, Priya ; Holmes, Oliver ; Xu, Qinying ; Leonard, Conrad ; Wood, Scott ; Grimmond, Sean M ; Bueno, Raphael ; Fennell, Dean A ; Pearson, John V ; Robinson, Bruce W ; Waddell, Nicola

Genome medicine, 2022-05, Vol.14 (1), p.58-58, Article 58 [Periódico revisado por pares]

England: BioMed Central

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