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1 |
Material Type: Artigo
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ART: a next-generation sequencing read simulatorHuang, Weichun ; Li, Leping ; Myers, Jason R ; Marth, Gabor TBioinformatics, 2012-02, Vol.28 (4), p.593-594 [Periódico revisado por pares]Oxford: Oxford University PressTexto completo disponível |
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Material Type: Artigo
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MOSAIK: a hash-based algorithm for accurate next-generation sequencing short-read mappingLee, Wan-Ping ; Stromberg, Michael P ; Ward, Alistair ; Stewart, Chip ; Garrison, Erik P ; Marth, Gabor T Hsiao, Chuhsing KatePloS one, 2014-03, Vol.9 (3), p.e90581 [Periódico revisado por pares]United States: Public Library of ScienceTexto completo disponível |
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Material Type: Artigo
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SSW library: an SIMD Smith-Waterman C/C++ library for use in genomic applicationsZhao, Mengyao ; Lee, Wan-Ping ; Garrison, Erik P ; Marth, Gabor T Mariño-Ramírez, LeonardoPloS one, 2013-12, Vol.8 (12), p.e82138-e82138 [Periódico revisado por pares]United States: Public Library of ScienceTexto completo disponível |
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Material Type: Artigo
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The variant call format and VCFtoolsDanecek, Petr ; Auton, Adam ; Abecasis, Goncalo ; Albers, Cornelis A ; Banks, Eric ; DePristo, Mark A ; Handsaker, Robert E ; Lunter, Gerton ; Marth, Gabor T ; Sherry, Stephen T ; McVean, Gilean ; Durbin, RichardBioinformatics, 2011-08, Vol.27 (15), p.2156-2158 [Periódico revisado por pares]Oxford: Oxford University PressTexto completo disponível |
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Material Type: Artigo
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SpeedSeq: ultra-fast personal genome analysis and interpretationChiang, Colby ; Layer, Ryan M ; Faust, Gregory G ; Lindberg, Michael R ; Rose, David B ; Garrison, Erik P ; Marth, Gabor T ; Quinlan, Aaron R ; Hall, Ira MNature methods, 2015-10, Vol.12 (10), p.966-968 [Periódico revisado por pares]United States: Nature Publishing GroupTexto completo disponível |
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Material Type: Artigo
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GIGGLE: a search engine for large-scale integrated genome analysisLayer, Ryan M ; Pedersen, Brent S ; DiSera, Tonya ; Marth, Gabor T ; Gertz, Jason ; Quinlan, Aaron RNature methods, 2018-02, Vol.15 (2), p.123-126 [Periódico revisado por pares]United States: Nature Publishing GroupTexto completo disponível |
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Material Type: Artigo
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BamTools: a C++ API and toolkit for analyzing and managing BAM filesBARNETT, Derek W ; GARRISON, Erik K ; QUINLAN, Aaron R ; STRÖMBERG, Michael P ; MARTH, Gabor TBioinformatics (Oxford, England), 2011-06, Vol.27 (12), p.1691-1695 [Periódico revisado por pares]Oxford: Oxford University PressTexto completo disponível |
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Material Type: Artigo
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Pyrobayes: an improved base caller for SNP discovery in pyrosequencesMarth, Gábor T ; Quinlan, Aaron R ; Stewart, Donald A ; Strömberg, Michael PNature methods, 2008-02, Vol.5 (2), p.179-181 [Periódico revisado por pares]United States: Nature Publishing GroupTexto completo disponível |
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Material Type: Artigo
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Automated size selection for short cell-free DNA fragments enriches for circulating tumor DNA and improves error correction during next generation sequencingHellwig, Sabine ; Nix, David A ; Gligorich, Keith M ; O'Shea, John M ; Thomas, Alun ; Fuertes, Carrie L ; Bhetariya, Preetida J ; Marth, Gabor T ; Bronner, Mary P ; Underhill, Hunter R Adalsteinsson, ViktorPloS one, 2018-07, Vol.13 (7), p.e0197333-e0197333 [Periódico revisado por pares]United States: Public Library of ScienceTexto completo disponível |
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Material Type: Artigo
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A comprehensive map of mobile element insertion polymorphisms in humansStewart, Chip ; Kural, Deniz ; Strömberg, Michael P ; Walker, Jerilyn A ; Konkel, Miriam K ; Stütz, Adrian M ; Urban, Alexander E ; Grubert, Fabian ; Lam, Hugo Y K ; Lee, Wan-Ping ; Busby, Michele ; Indap, Amit R ; Garrison, Erik ; Huff, Chad ; Xing, Jinchuan ; Snyder, Michael P ; Jorde, Lynn B ; Batzer, Mark A ; Korbel, Jan O ; Marth, Gabor T Malik, Harmit S.PLoS genetics, 2011-08, Vol.7 (8), p.e1002236 [Periódico revisado por pares]United States: Public Library of ScienceTexto completo disponível |