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1
Viral dynamics of acute SARS-CoV-2 infection and applications to diagnostic and public health strategies
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Viral dynamics of acute SARS-CoV-2 infection and applications to diagnostic and public health strategies

Kissler, Stephen M ; Fauver, Joseph R ; Mack, Christina ; Olesen, Scott W ; Tai, Caroline ; Shiue, Kristin Y ; Kalinich, Chaney C ; Jednak, Sarah ; Ott, Isabel M ; Vogels, Chantal B F ; Wohlgemuth, Jay ; Weisberger, James ; DiFiori, John ; Anderson, Deverick J ; Mancell, Jimmie ; Ho, David D ; Grubaugh, Nathan D ; Grad, Yonatan H Riley, Steven

PLoS biology, 2021-07, Vol.19 (7), p.e3001333-e3001333 [Periódico revisado por pares]

United States: Public Library of Science

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2
Coast-to-Coast Spread of SARS-CoV-2 during the Early Epidemic in the United States
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Artigo
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Coast-to-Coast Spread of SARS-CoV-2 during the Early Epidemic in the United States

Fauver, Joseph R. ; Petrone, Mary E. ; Hodcroft, Emma B. ; Shioda, Kayoko ; Ehrlich, Hanna Y. ; Watts, Alexander G. ; Vogels, Chantal B.F. ; Brito, Anderson F. ; Alpert, Tara ; Muyombwe, Anthony ; Razeq, Jafar ; Downing, Randy ; Cheemarla, Nagarjuna R. ; Wyllie, Anne L. ; Kalinich, Chaney C. ; Ott, Isabel M. ; Quick, Joshua ; Loman, Nicholas J. ; Neugebauer, Karla M. ; Greninger, Alexander L. ; Jerome, Keith R. ; Roychoudhury, Pavitra ; Xie, Hong ; Shrestha, Lasata ; Huang, Meei-Li ; Pitzer, Virginia E. ; Iwasaki, Akiko ; Omer, Saad B. ; Khan, Kamran ; Bogoch, Isaac I. ; Martinello, Richard A. ; Foxman, Ellen F. ; Landry, Marie L. ; Neher, Richard A. ; Ko, Albert I. ; Grubaugh, Nathan D.

Cell, 2020-05, Vol.181 (5), p.990-996.e5 [Periódico revisado por pares]

United States: Elsevier Inc

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3
Detection of SARS-CoV-2 RNA by multiplex RT-qPCR
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Detection of SARS-CoV-2 RNA by multiplex RT-qPCR

Kudo, Eriko ; Israelow, Benjamin ; Vogels, Chantal B F ; Lu, Peiwen ; Wyllie, Anne L ; Tokuyama, Maria ; Venkataraman, Arvind ; Brackney, Doug E ; Ott, Isabel M ; Petrone, Mary E ; Earnest, Rebecca ; Lapidus, Sarah ; Muenker, M Catherine ; Moore, Adam J ; Casanovas-Massana, Arnau ; Omer, Saad B ; Dela Cruz, Charles S ; Farhadian, Shelli F ; Ko, Albert I ; Grubaugh, Nathan D ; Iwasaki, Akiko Sugden, Bill

PLoS biology, 2020-10, Vol.18 (10), p.e3000867 [Periódico revisado por pares]

United States: Public Library of Science

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4
Transmissibility of emerging viral zoonoses
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Artigo
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Transmissibility of emerging viral zoonoses

Walker, Joseph W ; Han, Barbara A ; Ott, Isabel M ; Drake, John M Hsiao, Chuhsing Kate

PloS one, 2018-11, Vol.13 (11), p.e0206926-e0206926 [Periódico revisado por pares]

United States: Public Library of Science

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5
Stability of SARS-CoV-2 RNA in Nonsupplemented Saliva
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Artigo
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Stability of SARS-CoV-2 RNA in Nonsupplemented Saliva

Ott, Isabel M ; Strine, Madison S ; Watkins, Anne E ; Boot, Maikel ; Kalinich, Chaney C ; Harden, Christina A ; Vogels, Chantal B F ; Casanovas-Massana, Arnau ; Moore, Adam J ; Muenker, M Catherine ; Nakahata, Maura ; Tokuyama, Maria ; Nelson, Allison ; Fournier, John ; Bermejo, Santos ; Campbell, Melissa ; Datta, Rupak ; Dela Cruz, Charles S ; Farhadian, Shelli F ; Ko, Albert I ; Iwasaki, Akiko ; Grubaugh, Nathan D ; Wilen, Craig B ; Wyllie, Anne L

Emerging infectious diseases, 2021-04, Vol.27 (4), p.1146-1150 [Periódico revisado por pares]

United States: U.S. National Center for Infectious Diseases

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6
Lineage abundance estimation for SARS-CoV-2 in wastewater using transcriptome quantification techniques
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Artigo
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Lineage abundance estimation for SARS-CoV-2 in wastewater using transcriptome quantification techniques

Baaijens, Jasmijn A ; Zulli, Alessandro ; Ott, Isabel M ; Nika, Ioanna ; van der Lugt, Mart J ; Petrone, Mary E ; Alpert, Tara ; Fauver, Joseph R ; Kalinich, Chaney C ; Vogels, Chantal B F ; Breban, Mallery I ; Duvallet, Claire ; McElroy, Kyle A ; Ghaeli, Newsha ; Imakaev, Maxim ; Mckenzie-Bennett, Malaika F ; Robison, Keith ; Plocik, Alex ; Schilling, Rebecca ; Pierson, Martha ; Littlefield, Rebecca ; Spencer, Michelle L ; Simen, Birgitte B ; Hanage, William P ; Grubaugh, Nathan D ; Peccia, Jordan ; Baym, Michael

Genome Biology, 2022-11, Vol.23 (1), p.236-20, Article 236 [Periódico revisado por pares]

England: BioMed Central

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7
DengueSeq: a pan-serotype whole genome amplicon sequencing protocol for dengue virus
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Artigo
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DengueSeq: a pan-serotype whole genome amplicon sequencing protocol for dengue virus

Vogels, Chantal B F ; Hill, Verity ; Breban, Mallery I ; Chaguza, Chrispin ; Paul, Lauren M ; Sodeinde, Afeez ; Taylor-Salmon, Emma ; Ott, Isabel M ; Petrone, Mary E ; Dijk, Dennis ; Jonges, Marcel ; Welkers, Matthijs R A ; Locksmith, Timothy ; Dong, Yibo ; Tarigopula, Namratha ; Tekin, Omer ; Schmedes, Sarah ; Bunch, Sylvia ; Cano, Natalia ; Jaber, Rayah ; Panzera, Charles ; Stryker, Ian ; Vergara, Julieta ; Zimler, Rebecca ; Kopp, Edgar ; Heberlein, Lea ; Herzog, Kaylee S ; Fauver, Joseph R ; Morrison, Andrea M ; Michael, Scott F ; Grubaugh, Nathan D

BMC genomics, 2024-05, Vol.25 (1), p.433-433, Article 433 [Periódico revisado por pares]

England: BioMed Central Ltd

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8
Real-time public health communication of local SARS-CoV-2 genomic epidemiology
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Artigo
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Real-time public health communication of local SARS-CoV-2 genomic epidemiology

Kalinich, Chaney C ; Jensen, Cole G ; Neugebauer, Peter ; Petrone, Mary E ; Peña-Hernández, Mario ; Ott, Isabel M ; Wyllie, Anne L ; Alpert, Tara ; Vogels, Chantal B F ; Fauver, Joseph R ; Grubaugh, Nathan D ; Brito, Anderson F

PLoS biology, 2020-08, Vol.18 (8), p.e3000869-e3000869 [Periódico revisado por pares]

United States: Public Library of Science

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9
Sex differences in immune responses that underlie COVID-19 disease outcomes
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Artigo
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Sex differences in immune responses that underlie COVID-19 disease outcomes

Takahashi, Takehiro ; Ellingson, Mallory K ; Wong, Patrick ; Israelow, Benjamin ; Lucas, Carolina ; Klein, Jon ; Silva, Julio ; Mao, Tianyang ; Oh, Ji Eun ; Tokuyama, Maria ; Lu, Peiwen ; Venkataraman, Arvind ; Park, Annsea ; Liu, Feimei ; Meir, Amit ; Sun, Jonathan ; Wang, Eric Y ; Casanovas-Massana, Arnau ; Wyllie, Anne L ; Vogels, Chantal B F ; Earnest, Rebecca ; Lapidus, Sarah ; Ott, Isabel M ; Moore, Adam J ; Shaw, Albert ; Fournier, John B ; Odio, Camila D ; Farhadian, Shelli ; Dela Cruz, Charles ; Grubaugh, Nathan D ; Schulz, Wade L ; Ring, Aaron M ; Ko, Albert I ; Omer, Saad B ; Iwasaki, Akiko

Nature (London), 2020-12, Vol.588 (7837), p.315-320 [Periódico revisado por pares]

England: Nature Publishing Group

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10
Longitudinal analyses reveal immunological misfiring in severe COVID-19
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Longitudinal analyses reveal immunological misfiring in severe COVID-19

Lucas, Carolina ; Wong, Patrick ; Klein, Jon ; Castro, Tiago B R ; Silva, Julio ; Sundaram, Maria ; Ellingson, Mallory K ; Mao, Tianyang ; Oh, Ji Eun ; Israelow, Benjamin ; Takahashi, Takehiro ; Tokuyama, Maria ; Lu, Peiwen ; Venkataraman, Arvind ; Park, Annsea ; Mohanty, Subhasis ; Wang, Haowei ; Wyllie, Anne L ; Vogels, Chantal B F ; Earnest, Rebecca ; Lapidus, Sarah ; Ott, Isabel M ; Moore, Adam J ; Muenker, M Catherine ; Fournier, John B ; Campbell, Melissa ; Odio, Camila D ; Casanovas-Massana, Arnau ; Herbst, Roy ; Shaw, Albert C ; Medzhitov, Ruslan ; Schulz, Wade L ; Grubaugh, Nathan D ; Dela Cruz, Charles ; Farhadian, Shelli ; Ko, Albert I ; Omer, Saad B ; Iwasaki, Akiko

Nature (London), 2020-08, Vol.584 (7821), p.463-469 [Periódico revisado por pares]

England: Nature Publishing Group

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