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Interactome3D: adding structural details to protein networks
Interactome3D: adding structural details to protein networks
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Interactome3D: adding structural details to protein networks

Mosca, Roberto ; Céol, Arnaud ; Aloy, Patrick

Nature methods, 2013-01, Vol.10 (1), p.47-53 [Periódico revisado por pares]

United States: Nature Publishing Group

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3did: a catalog of domain-based interactions of known three-dimensional structure
3did: a catalog of domain-based interactions of known three-dimensional structure
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3did: a catalog of domain-based interactions of known three-dimensional structure

Mosca, Roberto ; Céol, Arnaud ; Stein, Amelie ; Olivella, Roger ; Aloy, Patrick

Nucleic acids research, 2014-01, Vol.42 (Database issue), p.D374-D379 [Periódico revisado por pares]

England: Oxford University Press

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3
Systems analysis of intracellular pH vulnerabilities for cancer therapy
Systems analysis of intracellular pH vulnerabilities for cancer therapy
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Systems analysis of intracellular pH vulnerabilities for cancer therapy

Persi, Erez ; Duran-Frigola, Miquel ; Damaghi, Mehdi ; Roush, William R ; Aloy, Patrick ; Cleveland, John L ; Gillies, Robert J ; Ruppin, Eytan

Nature communications, 2018-07, Vol.9 (1), p.2997-11, Article 2997 [Periódico revisado por pares]

England: Nature Publishing Group

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4
A reference map of the human binary protein interactome
A reference map of the human binary protein interactome
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A reference map of the human binary protein interactome

Luck, Katja ; Kim, Dae-Kyum ; Lambourne, Luke ; Spirohn, Kerstin ; Begg, Bridget E ; Bian, Wenting ; Brignall, Ruth ; Cafarelli, Tiziana ; Campos-Laborie, Francisco J ; Charloteaux, Benoit ; Choi, Dongsic ; Coté, Atina G ; Daley, Meaghan ; Deimling, Steven ; Desbuleux, Alice ; Dricot, Amélie ; Gebbia, Marinella ; Hardy, Madeleine F ; Kishore, Nishka ; Knapp, Jennifer J ; Kovács, István A ; Lemmens, Irma ; Mee, Miles W ; Mellor, Joseph C ; Pollis, Carl ; Pons, Carles ; Richardson, Aaron D ; Schlabach, Sadie ; Teeking, Bridget ; Yadav, Anupama ; Babor, Mariana ; Balcha, Dawit ; Basha, Omer ; Bowman-Colin, Christian ; Chin, Suet-Feung ; Choi, Soon Gang ; Colabella, Claudia ; Coppin, Georges ; D'Amata, Cassandra ; De Ridder, David ; De Rouck, Steffi ; Duran-Frigola, Miquel ; Ennajdaoui, Hanane ; Goebels, Florian ; Goehring, Liana ; Gopal, Anjali ; Haddad, Ghazal ; Hatchi, Elodie ; Helmy, Mohamed ; Jacob, Yves ; Kassa, Yoseph ; Landini, Serena ; Li, Roujia ; van Lieshout, Natascha ; MacWilliams, Andrew ; Markey, Dylan ; Paulson, Joseph N ; Rangarajan, Sudharshan ; Rasla, John ; Rayhan, Ashyad ; Rolland, Thomas ; San-Miguel, Adriana ; Shen, Yun ; Sheykhkarimli, Dayag ; Sheynkman, Gloria M ; Simonovsky, Eyal ; Taşan, Murat ; Tejeda, Alexander ; Tropepe, Vincent ; Twizere, Jean-Claude ; Wang, Yang ; Weatheritt, Robert J ; Weile, Jochen ; Xia, Yu ; Yang, Xinping ; Yeger-Lotem, Esti ; Zhong, Quan ; Aloy, Patrick ; Bader, Gary D ; De Las Rivas, Javier ; Gaudet, Suzanne ; Hao, Tong ; Rak, Janusz ; Tavernier, Jan ; Hill, David E ; Vidal, Marc ; Roth, Frederick P ; Calderwood, Michael A

Nature (London), 2020-04, Vol.580 (7803), p.402-408 [Periódico revisado por pares]

England: Nature Publishing Group

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5
Contextual specificity in peptide-mediated protein interactions
Contextual specificity in peptide-mediated protein interactions
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Contextual specificity in peptide-mediated protein interactions

Stein, Amelie ; Aloy, Patrick Randau, Lennart

PloS one, 2008-07, Vol.3 (7), p.e2524-e2524 [Periódico revisado por pares]

United States: Public Library of Science

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6
Integrating and formatting biomedical data as pre-calculated knowledge graph embeddings in the Bioteque
Integrating and formatting biomedical data as pre-calculated knowledge graph embeddings in the Bioteque
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Integrating and formatting biomedical data as pre-calculated knowledge graph embeddings in the Bioteque

Fernández-Torras, Adrià ; Duran-Frigola, Miquel ; Bertoni, Martino ; Locatelli, Martina ; Aloy, Patrick

Nature communications, 2022-09, Vol.13 (1), p.5304-5304, Article 5304 [Periódico revisado por pares]

London: Nature Publishing Group

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7
Drug target prediction and repositioning using an integrated network-based approach
Drug target prediction and repositioning using an integrated network-based approach
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Drug target prediction and repositioning using an integrated network-based approach

Emig, Dorothea ; Ivliev, Alexander ; Pustovalova, Olga ; Lancashire, Lee ; Bureeva, Svetlana ; Nikolsky, Yuri ; Bessarabova, Marina Aloy, Patrick

PloS one, 2013-04, Vol.8 (4), p.e60618-e60618 [Periódico revisado por pares]

United States: Public Library of Science

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8
Widespread Expansion of Protein Interaction Capabilities by Alternative Splicing
Widespread Expansion of Protein Interaction Capabilities by Alternative Splicing
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Widespread Expansion of Protein Interaction Capabilities by Alternative Splicing

Yang, Xinping ; Coulombe-Huntington, Jasmin ; Kang, Shuli ; Sheynkman, Gloria M. ; Hao, Tong ; Richardson, Aaron ; Sun, Song ; Yang, Fan ; Shen, Yun A. ; Murray, Ryan R. ; Spirohn, Kerstin ; Begg, Bridget E. ; Duran-Frigola, Miquel ; MacWilliams, Andrew ; Pevzner, Samuel J. ; Zhong, Quan ; Wanamaker, Shelly A. ; Tam, Stanley ; Ghamsari, Lila ; Sahni, Nidhi ; Yi, Song ; Rodriguez, Maria D. ; Balcha, Dawit ; Tan, Guihong ; Costanzo, Michael ; Andrews, Brenda ; Boone, Charles ; Zhou, Xianghong J. ; Salehi-Ashtiani, Kourosh ; Charloteaux, Benoit ; Chen, Alyce A. ; Calderwood, Michael A. ; Aloy, Patrick ; Roth, Frederick P. ; Hill, David E. ; Iakoucheva, Lilia M. ; Xia, Yu ; Vidal, Marc

Cell, 2016-02, Vol.164 (4), p.805-817 [Periódico revisado por pares]

United States: Elsevier Inc

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9
Prediction and validation of gene-disease associations using methods inspired by social network analyses
Prediction and validation of gene-disease associations using methods inspired by social network analyses
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Prediction and validation of gene-disease associations using methods inspired by social network analyses

Singh-Blom, U Martin ; Natarajan, Nagarajan ; Tewari, Ambuj ; Woods, John O ; Dhillon, Inderjit S ; Marcotte, Edward M Aloy, Patrick

PloS one, 2013-05, Vol.8 (5), p.e58977 [Periódico revisado por pares]

United States: Public Library of Science

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10
Detecting similar binding pockets to enable systems polypharmacology
Detecting similar binding pockets to enable systems polypharmacology
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Detecting similar binding pockets to enable systems polypharmacology

Duran-Frigola, Miquel ; Siragusa, Lydia ; Ruppin, Eytan ; Barril, Xavier ; Cruciani, Gabriele ; Aloy, Patrick Schlessinger, Avner

PLoS computational biology, 2017-06, Vol.13 (6), p.e1005522-e1005522 [Periódico revisado por pares]

United States: Public Library of Science

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