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Material Type: Artigo
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A Curated Rotamer Library for Common Post-Translational Modifications of ProteinsZhang, Oufan ; Naik, Shubhankar A ; Liu, Zi Hao ; Forman-Kay, Julie ; Head-Gordon, Teresa Elofsson, ArneBioinformatics (Oxford, England), 2024-07, Vol.40 (7) [Periódico revisado por pares]Oxford University PressTexto completo disponível |
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Material Type: Artigo
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isolateR: an R package for generating microbial libraries from Sanger sequencing dataDaisley, Brendan ; Vancuren, Sarah J ; Brettingham, Dylan J L ; Wilde, Jacob ; Renwick, Simone ; Macpherson, Christine ; Good, David A ; Botschner, Alexander J ; Yen, Sandi ; Hill, Janet E ; Sorbara, Matthew T ; Allen-Vercoe, Emma Schwartz, RussellBioinformatics (Oxford, England), 2024-07, Vol.40 (7) [Periódico revisado por pares]Oxford University PressTexto completo disponível |
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Material Type: Artigo
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Unravelling reference bias in ancient DNA datasetsDolenz, Stephanie ; van der Valk, Tom ; Jin, Chenyu ; Oppenheimer, Jonas ; Bilal Sharif, Muhammad ; Orlando, Ludovic ; Shapiro, Beth ; Dalén, Love ; Heintzman, Peter D Valencia, AlfonsoBioinformatics (Oxford, England), 2024-07, Vol.40 (7) [Periódico revisado por pares]Oxford University PressTexto completo disponível |
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Material Type: Artigo
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Pangenome graph layout by Path-Guided Stochastic Gradient DescentHeumos, Simon ; Guarracino, Andrea ; Schmelzle, Jan-Niklas M ; Li, Jiajie ; Zhang, Zhiru ; Hagmann, Jörg ; Nahnsen, Sven ; Prins, Pjotr ; Garrison, Erik Robinson, PeterBioinformatics (Oxford, England), 2024-07, Vol.40 (7) [Periódico revisado por pares]Oxford University PressTexto completo disponível |
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Material Type: Artigo
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PredGCN: a Pruning-enabled Gene-Cell Net for automatic cell annotation of single cell transcriptome dataQi, Qi ; Wang, Yunhe ; Huang, Yujian ; Fan, Yi ; Li, Xiangtao Alkan, CanBioinformatics (Oxford, England), 2024-07, Vol.40 (7) [Periódico revisado por pares]Oxford University PressTexto completo disponível |
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Material Type: Artigo
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HGTDR: Advancing drug repurposing with heterogeneous graph transformersGharizadeh, Ali ; Abbasi, Karim ; Ghareyazi, Amin ; Mofrad, Mohammad R K ; Rabiee, Hamid R Lu, ZhiyongBioinformatics (Oxford, England), 2024-07, Vol.40 (7) [Periódico revisado por pares]Oxford University PressTexto completo disponível |
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Material Type: Artigo
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SFINN: inferring gene regulatory network from single-cell and spatial transcriptomic data with shared factor neighborhood and integrated neural networkWang, Yongjie ; Zhou, Fengfan ; Guan, Jinting Birol, InancBioinformatics (Oxford, England), 2024-07, Vol.40 (7) [Periódico revisado por pares]Oxford University PressTexto completo disponível |
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Material Type: Artigo
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Reverse network diffusion to remove indirect noise for better inference of gene regulatory networksYu, Jiating ; Leng, Jiacheng ; Yuan, Fan ; Sun, Duanchen ; Wu, Ling-Yun Martelli, Pier LuigiBioinformatics (Oxford, England), 2024-07, Vol.40 (7) [Periódico revisado por pares]Oxford University PressTexto completo disponível |
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Material Type: Artigo
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DeepGSEA: explainable deep gene set enrichment analysis for single-cell transcriptomic dataXiong, Guangzhi ; LeRoy, Nathan J ; Bekiranov, Stefan ; Sheffield, Nathan C ; Zhang, Aidong Wren, JonathanBioinformatics (Oxford, England), 2024-07, Vol.40 (7) [Periódico revisado por pares]Oxford University PressTexto completo disponível |
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Material Type: Artigo
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FastHPOCR: pragmatic, fast, and accurate concept recognition using the human phenotype ontologyGroza, Tudor ; Gration, Dylan ; Baynam, Gareth ; Robinson, Peter N Wren, JonathanBioinformatics (Oxford, England), 2024-07, Vol.40 (7) [Periódico revisado por pares]Oxford University PressTexto completo disponível |