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Material Type: Artigo
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DIA-NN: neural networks and interference correction enable deep proteome coverage in high throughputDemichev, Vadim ; Messner, Christoph B ; Vernardis, Spyros I ; Lilley, Kathryn S ; Ralser, MarkusNature methods, 2020-01, Vol.17 (1), p.41-44 [Periódico revisado por pares]United States: Nature Publishing GroupTexto completo disponível |
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Material Type: Artigo
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MSnbase-an R/Bioconductor package for isobaric tagged mass spectrometry data visualization, processing and quantitationGatto, Laurent ; Lilley, Kathryn SBioinformatics, 2012-01, Vol.28 (2), p.288-289 [Periódico revisado por pares]Oxford: Oxford University PressTexto completo disponível |
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Material Type: Artigo
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dia-PASEF data analysis using FragPipe and DIA-NN for deep proteomics of low sample amountsDemichev, Vadim ; Szyrwiel, Lukasz ; Yu, Fengchao ; Teo, Guo Ci ; Rosenberger, George ; Niewienda, Agathe ; Ludwig, Daniela ; Decker, Jens ; Kaspar-Schoenefeld, Stephanie ; Lilley, Kathryn S ; Mülleder, Michael ; Nesvizhskii, Alexey I ; Ralser, MarkusNature communications, 2022-07, Vol.13 (1), p.3944-3944, Article 3944 [Periódico revisado por pares]England: Nature Publishing GroupTexto completo disponível |
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Material Type: Artigo
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Comprehensive identification of RNA-protein interactions in any organism using orthogonal organic phase separation (OOPS)Queiroz, Rayner M L ; Smith, Tom ; Villanueva, Eneko ; Marti-Solano, Maria ; Monti, Mie ; Pizzinga, Mariavittoria ; Mirea, Dan-Mircea ; Ramakrishna, Manasa ; Harvey, Robert F ; Dezi, Veronica ; Thomas, Gavin H ; Willis, Anne E ; Lilley, Kathryn SNature biotechnology, 2019-02, Vol.37 (2), p.169-178 [Periódico revisado por pares]United States: Nature Publishing GroupTexto completo disponível |
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Material Type: Artigo
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Toward a Comprehensive Map of the Effectors of Rab GTPasesGillingham, Alison K. ; Sinka, Rita ; Torres, Isabel L. ; Lilley, Kathryn S. ; Munro, SeanDevelopmental cell, 2014-11, Vol.31 (3), p.358-373 [Periódico revisado por pares]United States: Elsevier IncTexto completo disponível |
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Material Type: Artigo
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Tracking the embryonic stem cell transition from ground state pluripotencyKalkan, Tüzer ; Olova, Nelly ; Roode, Mila ; Mulas, Carla ; Lee, Heather J ; Nett, Isabelle ; Marks, Hendrik ; Walker, Rachael ; Stunnenberg, Hendrik G ; Lilley, Kathryn S ; Nichols, Jennifer ; Reik, Wolf ; Bertone, Paul ; Smith, AustinDevelopment (Cambridge), 2017-04, Vol.144 (7), p.1221-1234 [Periódico revisado por pares]England: The Company of Biologists LtdTexto completo disponível |
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Material Type: Artigo
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Changes in the Arabidopsis RNA-binding proteome reveal novel stress response mechanismsMarondedze, Claudius ; Thomas, Ludivine ; Gehring, Chris ; Lilley, Kathryn SBMC plant biology, 2019-04, Vol.19 (1), p.139-139, Article 139 [Periódico revisado por pares]England: BioMed Central LtdTexto completo disponível |
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Material Type: Artigo
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Combining LOPIT with differential ultracentrifugation for high-resolution spatial proteomicsGeladaki, Aikaterini ; Kočevar Britovšek, Nina ; Breckels, Lisa M ; Smith, Tom S ; Vennard, Owen L ; Mulvey, Claire M ; Crook, Oliver M ; Gatto, Laurent ; Lilley, Kathryn SNature communications, 2019-01, Vol.10 (1), p.331-331, Article 331 [Periódico revisado por pares]England: Nature Publishing GroupTexto completo disponível |
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Material Type: Artigo
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Global analysis of protein-RNA interactions in SARS-CoV-2-infected cells reveals key regulators of infectionKamel, Wael ; Noerenberg, Marko ; Cerikan, Berati ; Chen, Honglin ; Järvelin, Aino I. ; Kammoun, Mohamed ; Lee, Jeffrey Y. ; Shuai, Ni ; Garcia-Moreno, Manuel ; Andrejeva, Anna ; Deery, Michael J. ; Johnson, Natasha ; Neufeldt, Christopher J. ; Cortese, Mirko ; Knight, Michael L. ; Lilley, Kathryn S. ; Martinez, Javier ; Davis, Ilan ; Bartenschlager, Ralf ; Mohammed, Shabaz ; Castello, AlfredoMolecular cell, 2021-07, Vol.81 (13), p.2851-2867.e7 [Periódico revisado por pares]United States: Elsevier IncTexto completo disponível |
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Material Type: Artigo
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A draft map of the mouse pluripotent stem cell spatial proteomeChristoforou, Andy ; Mulvey, Claire M ; Breckels, Lisa M ; Geladaki, Aikaterini ; Hurrell, Tracey ; Hayward, Penelope C ; Naake, Thomas ; Gatto, Laurent ; Viner, Rosa ; Martinez Arias, Alfonso ; Lilley, Kathryn SNature communications, 2016-01, Vol.7 (1), p.8992-8992, Article 9992 [Periódico revisado por pares]England: Nature Publishing GroupTexto completo disponível |