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Obtaining genetics insights from deep learning via explainable artificial intelligence
Obtaining genetics insights from deep learning via explainable artificial intelligence
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Obtaining genetics insights from deep learning via explainable artificial intelligence

Novakovsky, Gherman ; Dexter, Nick ; Libbrecht, Maxwell W ; Wasserman, Wyeth W ; Mostafavi, Sara

Nature reviews. Genetics, 2023-02, Vol.24 (2), p.125-137 [Periódico revisado por pares]

England: Nature Publishing Group

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An xQTL map integrates the genetic architecture of the human brain's transcriptome and epigenome
An xQTL map integrates the genetic architecture of the human brain's transcriptome and epigenome
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An xQTL map integrates the genetic architecture of the human brain's transcriptome and epigenome

Ng, Bernard ; White, Charles C ; Klein, Hans-Ulrich ; Sieberts, Solveig K ; McCabe, Cristin ; Patrick, Ellis ; Xu, Jishu ; Yu, Lei ; Gaiteri, Chris ; Bennett, David A ; Mostafavi, Sara ; De Jager, Philip L

Nature neuroscience, 2017-10, Vol.20 (10), p.1418-1426 [Periódico revisado por pares]

United States: Nature Publishing Group

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3
Inhalation of diesel exhaust and allergen alters human bronchial epithelium DNA methylation
Inhalation of diesel exhaust and allergen alters human bronchial epithelium DNA methylation
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Inhalation of diesel exhaust and allergen alters human bronchial epithelium DNA methylation

Clifford, Rachel L., PhD ; Jones, Meaghan J., PhD ; MacIsaac, Julia L., PhD ; McEwen, Lisa M., BSc ; Goodman, Sarah J., BSc ; Mostafavi, Sara, PhD ; Kobor, Michael S., PhD ; Carlsten, Chris, MD

Journal of allergy and clinical immunology, 2017-01, Vol.139 (1), p.112-121 [Periódico revisado por pares]

United States: Elsevier Inc

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4
Biological embedding of experience: A primer on epigenetics
Biological embedding of experience: A primer on epigenetics
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Biological embedding of experience: A primer on epigenetics

Aristizabal, Maria J. ; Anreiter, Ina ; Halldorsdottir, Thorhildur ; Odgers, Candice L. ; McDade, Thomas W. ; Goldenberg, Anna ; Mostafavi, Sara ; Kobor, Michael S. ; Binder, Elisabeth B. ; Sokolowski, Marla B. ; O’Donnell, Kieran J.

Proceedings of the National Academy of Sciences - PNAS, 2020-09, Vol.117 (38), p.23261-23269 [Periódico revisado por pares]

Washington: National Academy of Sciences

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5
The cis-Regulatory Atlas of the Mouse Immune System
The cis-Regulatory Atlas of the Mouse Immune System
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The cis-Regulatory Atlas of the Mouse Immune System

Yoshida, Hideyuki ; Lareau, Caleb A. ; Ramirez, Ricardo N. ; Rose, Samuel A. ; Maier, Barbara ; Wroblewska, Aleksandra ; Desland, Fiona ; Chudnovskiy, Aleksey ; Mortha, Arthur ; Dominguez, Claudia ; Tellier, Julie ; Kim, Edy ; Dwyer, Dan ; Shinton, Susan ; Nabekura, Tsukasa ; Qi, YiLin ; Yu, Bingfei ; Robinette, Michelle ; Kim, Ki-Wook ; Wagers, Amy ; Rhoads, Andrew ; Nutt, Stephen L. ; Brown, Brian D. ; Mostafavi, Sara ; Buenrostro, Jason D. ; Benoist, Christophe

Cell, 2019-02, Vol.176 (4), p.897-912.e20 [Periódico revisado por pares]

United States: Elsevier Inc

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6
Mosaic loss of Chromosome Y in aged human microglia
Mosaic loss of Chromosome Y in aged human microglia
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Mosaic loss of Chromosome Y in aged human microglia

Vermeulen, Michael C ; Pearse, Richard ; Young-Pearse, Tracy ; Mostafavi, Sara

Genome research, 2022-10, Vol.32 (10), p.1795-1807 [Periódico revisado por pares]

United States: Cold Spring Harbor Laboratory Press

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7
GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function
GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function
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GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function

Warde-Farley, David ; Donaldson, Sylva L ; Comes, Ovi ; Zuberi, Khalid ; Badrawi, Rashad ; Chao, Pauline ; Franz, Max ; Grouios, Chris ; Kazi, Farzana ; Lopes, Christian Tannus ; Maitland, Anson ; Mostafavi, Sara ; Montojo, Jason ; Shao, Quentin ; Wright, George ; Bader, Gary D ; Morris, Quaid

Nucleic acids research, 2010-07, Vol.38 (Web Server issue), p.W214-W220 [Periódico revisado por pares]

England: Oxford University Press

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8
Biologically relevant transfer learning improves transcription factor binding prediction
Biologically relevant transfer learning improves transcription factor binding prediction
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Biologically relevant transfer learning improves transcription factor binding prediction

Novakovsky, Gherman ; Saraswat, Manu ; Fornes, Oriol ; Mostafavi, Sara ; Wasserman, Wyeth W

Genome Biology, 2021-09, Vol.22 (1), p.280-280, Article 280 [Periódico revisado por pares]

England: BioMed Central

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9
JAK1 gain-of-function causes an autosomal dominant immune dysregulatory and hypereosinophilic syndrome
JAK1 gain-of-function causes an autosomal dominant immune dysregulatory and hypereosinophilic syndrome
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JAK1 gain-of-function causes an autosomal dominant immune dysregulatory and hypereosinophilic syndrome

Del Bel, Kate L., MSc ; Ragotte, Robert J., BSc ; Saferali, Aabida, MSc ; Lee, Susan, RN ; Vercauteren, Suzanne M., MD PhD ; Mostafavi, Sara A., PhD ; Schreiber, Richard A., MD ; Prendiville, Julie S., MD ; Phang, Min S., MD ; Halperin, Jess, MD ; Au, Nicholas, MD ; Dean, John M., MD BS ; Jewels, Emily, RN ; Junker, Anne K., MD ; Rogers, Paul C., MB ChB MBA ; Seear, Michael, MB ChB ; McKinnon, Margaret L., MD ; Turvey, Stuart E., MB BS, DPhil

Journal of allergy and clinical immunology, 2017-06, Vol.139 (6), p.2016-2020.e5 [Periódico revisado por pares]

United States: Elsevier Inc

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10
Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals
Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals
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Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals

Battle, Alexis ; Mostafavi, Sara ; Zhu, Xiaowei ; Potash, James B ; Weissman, Myrna M ; McCormick, Courtney ; Haudenschild, Christian D ; Beckman, Kenneth B ; Shi, Jianxin ; Mei, Rui ; Urban, Alexander E ; Montgomery, Stephen B ; Levinson, Douglas F ; Koller, Daphne

Genome research, 2014-01, Vol.24 (1), p.14-24 [Periódico revisado por pares]

United States: Cold Spring Harbor Laboratory Press

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