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1
Sherlock: an open-source data platform to store, analyze and integrate Big Data for computational biologists [version 3; peer review: 2 approved]
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Article
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Sherlock: an open-source data platform to store, analyze and integrate Big Data for computational biologists [version 3; peer review: 2 approved]

Bohar, Balazs ; Fazekas, David ; Madgwick, Matthew ; Csabai, Luca ; Olbei, Marton ; Korcsmáros, Tamás ; Szalay-Beko, Mate

F1000 research, 2023, Vol.10, p.409-409 [Peer Reviewed Journal]

F1000 Research Ltd

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2
Sherlock: an open-source data platform to store, analyze and integrate Big Data for computational biologists [version 2; peer review: 2 approved]
Material Type:
Article
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Sherlock: an open-source data platform to store, analyze and integrate Big Data for computational biologists [version 2; peer review: 2 approved]

Bohar, Balazs ; Fazekas, David ; Madgwick, Matthew ; Csabai, Luca ; Olbei, Marton ; Korcsmáros, Tamás ; Szalay-Beko, Mate

F1000 research, 2021, Vol.10, p.409 [Peer Reviewed Journal]

England: F1000 Research Ltd

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3
Control of RNA processing by a large non-coding RNA over-expressed in carcinomas
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Control of RNA processing by a large non-coding RNA over-expressed in carcinomas

Lin, Rui ; Roychowdhury-Saha, Manami ; Black, Chris ; Watt, Andrew T. ; Marcusson, Eric G. ; Freier, Susan M. ; Edgington, Thomas S.

FEBS letters, 2011-02, Vol.585 (4), p.671-676 [Peer Reviewed Journal]

England: Elsevier B.V

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4
High-Resolution Molecular Validation of Self-Renewal and Spontaneous Differentiation in Clinical-Grade Adipose-Tissue Derived Human Mesenchymal Stem Cells
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High-Resolution Molecular Validation of Self-Renewal and Spontaneous Differentiation in Clinical-Grade Adipose-Tissue Derived Human Mesenchymal Stem Cells

Dudakovic, Amel ; Camilleri, Emily ; Riester, Scott M. ; Lewallen, Eric A. ; Kvasha, Sergiy ; Chen, Xiaoyue ; Radel, Darcie J. ; Anderson, Jarett M. ; Nair, Asha A. ; Evans, Jared M. ; Krych, Aaron J. ; Smith, Jay ; Deyle, David R. ; Stein, Janet L. ; Stein, Gary S. ; Im, Hee-Jeong ; Cool, Simon M. ; Westendorf, Jennifer J. ; Kakar, Sanjeev ; Dietz, Allan B. ; van Wijnen, Andre J.

Journal of cellular biochemistry, 2014-10, Vol.115 (10), p.1816-1828 [Peer Reviewed Journal]

United States: Blackwell Publishing Ltd

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5
Single-cell analysis defines a pancreatic fibroblast lineage that supports anti-tumor immunity
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Article
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Single-cell analysis defines a pancreatic fibroblast lineage that supports anti-tumor immunity

Hutton, Colin ; Heider, Felix ; Blanco-Gomez, Adrian ; Banyard, Antonia ; Kononov, Alexander ; Zhang, Xiaohong ; Karim, Saadia ; Paulus-Hock, Viola ; Watt, Dale ; Steele, Nina ; Kemp, Samantha ; Hogg, Elizabeth K.J. ; Kelly, Joanna ; Jackstadt, Rene-Filip ; Lopes, Filipa ; Menotti, Matteo ; Chisholm, Luke ; Lamarca, Angela ; Valle, Juan ; Sansom, Owen J. ; Springer, Caroline ; Malliri, Angeliki ; Marais, Richard ; Pasca di Magliano, Marina ; Zelenay, Santiago ; Morton, Jennifer P. ; Jørgensen, Claus

Cancer cell, 2021-09, Vol.39 (9), p.1227-1244.e20 [Peer Reviewed Journal]

United States: Elsevier Inc

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6
Endothelial signaling and the molecular basis of arteriovenous malformation
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Endothelial signaling and the molecular basis of arteriovenous malformation

Atri, Deepak ; Larrivée, Bruno ; Eichmann, Anne ; Simons, Michael

Cellular and molecular life sciences : CMLS, 2014-03, Vol.71 (5), p.867-883 [Peer Reviewed Journal]

Basel: Springer-Verlag

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7
Systems Biology in ELIXIR: modelling in the spotlight [version 1; peer review: 1 approved, 2 approved with reservations]
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Article
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Systems Biology in ELIXIR: modelling in the spotlight [version 1; peer review: 1 approved, 2 approved with reservations]

Martins dos Santos, Vitor ; Anton, Mihail ; Szomolay, Barbara ; Ostaszewski, Marek ; Arts, Ilja ; Benfeitas, Rui ; Dominguez Del Angel, Victoria ; Ferk, Polonca ; Fey, Dirk ; Goble, Carole ; Golebiewski, Martin ; Gruden, Kristina ; Heil, Katharina F. ; Hermjakob, Henning ; Kahlem, Pascal ; Klapa, Maria I. ; Koehorst, Jasper ; Kolodkin, Alexey ; Kutmon, Martina ; Leskošek, Brane ; Moretti, Sébastien ; Müller, Wolfgang ; Pagni, Marco ; Rezen, Tadeja ; Rocha, Miguel ; Rozman, Damjana ; Šafránek, David ; Sheriff, Rahuman S. Malik ; Suarez Diez, Maria ; Van Steen, Kristel ; Westerhoff, Hans V ; Wittig, Ulrike ; Wolstencroft, Katherine ; Zupanic, Anze ; Evelo, Chris T. ; Hancock, John M.

F1000 research, 2022, Vol.11, p.1265 [Peer Reviewed Journal]

England: Faculty of 1000 Ltd

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8
Systems Biology in ELIXIR: modelling in the spotlight [version 2; peer review: 1 approved, 2 approved with reservations]
Material Type:
Article
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Systems Biology in ELIXIR: modelling in the spotlight [version 2; peer review: 1 approved, 2 approved with reservations]

Martins dos Santos, Vitor ; Anton, Mihail ; Szomolay, Barbara ; Ostaszewski, Marek ; Arts, Ilja ; Benfeitas, Rui ; Dominguez Del Angel, Victoria ; Domínguez-Romero, Elena ; Ferk, Polonca ; Fey, Dirk ; Goble, Carole ; Golebiewski, Martin ; Gruden, Kristina ; Heil, Katharina F. ; Hermjakob, Henning ; Kahlem, Pascal ; Klapa, Maria I. ; Koehorst, Jasper ; Kolodkin, Alexey ; Kutmon, Martina ; Leskošek, Brane ; Moretti, Sébastien ; Müller, Wolfgang ; Pagni, Marco ; Rezen, Tadeja ; Rocha, Miguel ; Rozman, Damjana ; Šafránek, David ; T. Scott, William ; Sheriff, Rahuman S. Malik ; Suarez Diez, Maria ; Van Steen, Kristel ; Westerhoff, Hans V ; Wittig, Ulrike ; Wolstencroft, Katherine ; Zupanic, Anze ; Evelo, Chris T. ; Hancock, John M.

F1000 research, 2022-01, Vol.11, p.1265 [Peer Reviewed Journal]

F1000 Research Ltd

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9
Pulmonary Arterial Hypertension and Hereditary Haemorrhagic Telangiectasia
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Article
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Pulmonary Arterial Hypertension and Hereditary Haemorrhagic Telangiectasia

Vorselaars, Veronique M M ; Hosman, Anna E ; Westermann, Cornelis J J ; Snijder, Repke J ; Mager, Johannes J ; Goumans, Marie-Jose ; Post, Marco C

International journal of molecular sciences, 2018-10, Vol.19 (10), p.3203 [Peer Reviewed Journal]

Switzerland: MDPI

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10
A methylbenzimidazole derivative regulates mammalian circadian rhythms by targeting Cryptochrome proteins [version 2; peer review: 2 approved]
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Article
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A methylbenzimidazole derivative regulates mammalian circadian rhythms by targeting Cryptochrome proteins [version 2; peer review: 2 approved]

Yagi, Moeri ; Miller, Simon ; Nagai, Yoshiko ; Inuki, Shinsuke ; Sato, Ayato ; Hirota, Tsuyoshi

F1000 research, 2022, Vol.11, p.1016-1016 [Peer Reviewed Journal]

F1000 Research Ltd

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