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Platform-independent and label-free quantitation of proteomic data using MS1 extracted ion chromatograms in skyline: application to protein acetylation and phosphorylation
Platform-independent and label-free quantitation of proteomic data using MS1 extracted ion chromatograms in skyline: application to protein acetylation and phosphorylation
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Platform-independent and label-free quantitation of proteomic data using MS1 extracted ion chromatograms in skyline: application to protein acetylation and phosphorylation

Schilling, Birgit ; Rardin, Matthew J ; MacLean, Brendan X ; Zawadzka, Anna M ; Frewen, Barbara E ; Cusack, Michael P ; Sorensen, Dylan J ; Bereman, Michael S ; Jing, Enxuan ; Wu, Christine C ; Verdin, Eric ; Kahn, C Ronald ; Maccoss, Michael J ; Gibson, Bradford W

Molecular & cellular proteomics, 2012-05, Vol.11 (5), p.202-214 [Periódico revisado por pares]

United States: The American Society for Biochemistry and Molecular Biology

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2
Using pattern recognition entropy to select mass chromatograms to prepare total ion current chromatograms from raw liquid chromatography–mass spectrometry data
Using pattern recognition entropy to select mass chromatograms to prepare total ion current chromatograms from raw liquid chromatography–mass spectrometry data
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Using pattern recognition entropy to select mass chromatograms to prepare total ion current chromatograms from raw liquid chromatography–mass spectrometry data

Chatterjee, Shiladitya ; Major, George H. ; Paull, Brett ; Rodriguez, Estrella Sanz ; Kaykhaii, Massoud ; Linford, Matthew R.

Journal of Chromatography A, 2018-07, Vol.1558, p.21-28 [Periódico revisado por pares]

Elsevier B.V

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3
Chromatograms and Mass Spectra of High-Mannose and Paucimannose N‑Glycans for Rapid Isomeric Identifications
Chromatograms and Mass Spectra of High-Mannose and Paucimannose N‑Glycans for Rapid Isomeric Identifications
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Chromatograms and Mass Spectra of High-Mannose and Paucimannose N‑Glycans for Rapid Isomeric Identifications

Liew, Chia Yen ; Chen, Jien-Lian ; Lin, Yen-Ting ; Luo, Hong-Sheng ; Hung, An-Ti ; Magoling, Bryan John Abel ; Nguan, Hock-Seng ; Lai, Charles Pin-Kuang ; Ni, Chi-Kung

Journal of proteome research, 2024-03, Vol.23 (3), p.939-955 [Periódico revisado por pares]

United States: American Chemical Society

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4
DSDecode： A Web-Based Tool for Decoding of Sequencing Chromatograms for Genotyping of Targeted Mutations
DSDecode： A Web-Based Tool for Decoding of Sequencing Chromatograms for Genotyping of Targeted Mutations
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DSDecode： A Web-Based Tool for Decoding of Sequencing Chromatograms for Genotyping of Targeted Mutations

Liu, Weizhi ; Xie, Xianrong ; Ma, Xingliang ; Li, Jun ; Chen, Jiehu ; Liu, Yao-Guang

Molecular plant, 2015-09, Vol.8 (9), p.1431-1433 [Periódico revisado por pares]

England: Elsevier Inc

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5
XFlow: An algorithm for extracting ion chromatograms
XFlow: An algorithm for extracting ion chromatograms
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XFlow: An algorithm for extracting ion chromatograms

Gutierrez, Mathew ; Smith, Rob Jacobs, Jon M.

PloS one, 2020-10, Vol.15 (10), p.e0227659-e0227659 [Periódico revisado por pares]

United States: Public Library of Science

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6
Automated tuning of denoising algorithms for noise removal in chromatograms
Automated tuning of denoising algorithms for noise removal in chromatograms
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Automated tuning of denoising algorithms for noise removal in chromatograms

Bosten, Emery ; Van Broeck, Peter ; Cabooter, Deirdre

Journal of Chromatography A, 2023-10, Vol.1709, p.464360, Article 464360 [Periódico revisado por pares]

Elsevier B.V

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7
One Step Forward for Reducing False Positive and False Negative Compound Identifications from Mass Spectrometry Metabolomics Data: New Algorithms for Constructing Extracted Ion Chromatograms and Detecting Chromatographic Peaks
One Step Forward for Reducing False Positive and False Negative Compound Identifications from Mass Spectrometry Metabolomics Data: New Algorithms for Constructing Extracted Ion Chromatograms and Detecting Chromatographic Peaks
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One Step Forward for Reducing False Positive and False Negative Compound Identifications from Mass Spectrometry Metabolomics Data: New Algorithms for Constructing Extracted Ion Chromatograms and Detecting Chromatographic Peaks

Myers, Owen D ; Sumner, Susan J ; Li, Shuzhao ; Barnes, Stephen ; Du, Xiuxia

Analytical chemistry (Washington), 2017-09, Vol.89 (17), p.8696-8703 [Periódico revisado por pares]

United States: American Chemical Society

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8
EIC + , an algorithm for automatic and unsupervised extraction of ion chromatograms in high resolution mass spectrometry
EIC + , an algorithm for automatic and unsupervised extraction of ion chromatograms in high resolution mass spectrometry
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EIC + , an algorithm for automatic and unsupervised extraction of ion chromatograms in high resolution mass spectrometry

Boulet, Jean-Claude

International journal of mass spectrometry, 2021-11, Vol.469, p.116672, Article 116672 [Periódico revisado por pares]

Elsevier B.V

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9
Automated tuning of denoising algorithms for noise removal in chromatograms
Automated tuning of denoising algorithms for noise removal in chromatograms
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Automated tuning of denoising algorithms for noise removal in chromatograms

Bosten, Emery ; Van Broeck, Peter ; Cabooter, Deirdre

JOURNAL OF CHROMATOGRAPHY A, 2023-10, Vol.1709 [Periódico revisado por pares]

ELSEVIER

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10
Chromatogram libraries improve peptide detection and quantification by data independent acquisition mass spectrometry
Chromatogram libraries improve peptide detection and quantification by data independent acquisition mass spectrometry
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Chromatogram libraries improve peptide detection and quantification by data independent acquisition mass spectrometry

Searle, Brian C ; Pino, Lindsay K ; Egertson, Jarrett D ; Ting, Ying S ; Lawrence, Robert T ; MacLean, Brendan X ; Villén, Judit ; MacCoss, Michael J

Nature communications, 2018-12, Vol.9 (1), p.5128-12, Article 5128 [Periódico revisado por pares]

England: Nature Publishing Group

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