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Large-scale copy number alterations are enriched for synthetic viability in BRCA1/BRCA2 tumors
Large-scale copy number alterations are enriched for synthetic viability in BRCA1/BRCA2 tumors
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Large-scale copy number alterations are enriched for synthetic viability in BRCA1/BRCA2 tumors

Zhu, Yingjie ; Pei, Xin ; Novaj, Ardijana ; Setton, Jeremy ; Bronder, Daniel ; Derakhshan, Fatemeh ; Selenica, Pier ; McDermott, Niamh ; Orman, Mehmet ; Plum, Sarina ; Subramanyan, Shyamal ; Braverman, Sara H ; McMillan, Biko ; Sinha, Sonali ; Ma, Jennifer ; Gazzo, Andrea ; Khan, Atif ; Bakhoum, Samuel ; Powell, Simon N ; Reis-Filho, Jorge S ; Riaz, Nadeem

Genome medicine, 2024-08, Vol.16 (1), p.1-17, Article 108 [Periódico revisado por pares]

London: BioMed Central Ltd

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2
Image‐based multiplex immune profiling of cancer tissues: translational implications. A report of the International Immuno‐oncology Biomarker Working Group on Breast Cancer
Image‐based multiplex immune profiling of cancer tissues: translational implications. A report of the International Immuno‐oncology Biomarker Working Group on Breast Cancer
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Image‐based multiplex immune profiling of cancer tissues: translational implications. A report of the International Immuno‐oncology Biomarker Working Group on Breast Cancer

Jahangir, Chowdhury Arif ; Page, David B ; Broeckx, Glenn ; Gonzalez, Claudia A ; Burke, Caoimbhe ; Reis‐Filho, Jorge S ; Ly, Amy ; Harms, Paul W ; Vieth, Michael ; Kos, Zuzana ; Diest, Paul J ; Thagaard, Jeppe ; Khiroya, Reena ; Acosta Haab, Gabriela ; Acs, Balazs ; Adams, Sylvia ; Almeida, Jonas S ; Alvarado‐Cabrero, Isabel ; Azmoudeh‐Ardalan, Farid ; Badve, Sunil ; Baharun, Nurkhairul Bariyah ; Bellolio, Enrique R ; Blenman, Kim RM ; Cheang, Maggie Chon U ; Ciompi, Francesco ; Cooper, Lee AD ; Coosemans, An ; Corredor, Germán ; Dantas Portela, Flavio Luis ; Demaria, Sandra ; Dudgeon, Sarah N ; Elghazawy, Mahmoud ; Fernandez‐Martín, Claudio ; Fineberg, Susan ; Fox, Stephen B ; Giltnane, Jennifer M ; Gnjatic, Sacha ; Grigoriadis, Anita ; Hanna, Matthew G ; Harbhajanka, Aparna ; Hart, Steven N ; Hartman, Johan ; Hewitt, Stephen ; Irshad, Sheeba ; Janssen, Emiel AM ; Kataoka, Tatsuki R ; Kawaguchi, Kosuke ; Khramtsov, Andrey I ; Kiraz, Umay ; Kirtani, Pawan ; Kodach, Liudmila L ; Korski, Konstanty ; Akturk, Guray ; Scott, Ely ; Lænkholm, Anne‐Vibeke ; Lennerz, Jochen K ; Lerousseau, Marvin ; Li, Xiaoxian ; Maley, Sai K ; Manur Narasimhamurthy, Vidya ; Marks, Douglas K ; Mehrotra, Ravi ; Michiels, Stefan ; Minhas, Fayyaz ul Amir Afsar ; Moore, David A ; Mushtaq, Shamim ; Nighat, Hussain ; Papathomas, Thomas ; Penault‐Llorca, Frederique ; Pinard, Christopher J ; Pinto‐Cardenas, Juan Carlos ; Pruneri, Giancarlo ; Rau, Tilman T ; Rimm, David ; Vincent‐Salomon, Anne ; Saltz, Joel ; Sayed, Shahin ; Hytopoulos, Evangelos ; Sotiriou, Christos ; Sur, Daniel ; Tanaka, Sunao ; Taxter, Timothy ; Tejpar, Sabine ; Teuwen, Jonas ; Thompson, E Aubrey ; Tramm, Trine ; Tran, William T ; Laak, Jeroen ; Verghese, Gregory E ; Viale, Giuseppe ; Wahab, Noorul ; Walter, Thomas ; Wen, Hannah Y ; Bartlett, John ; Loibl, Sibylle ; Denkert, Carsten ; Savas, Peter ; Loi, Sherene ; Specht Stovgaard, Elisabeth ; Rahman, Arman

The Journal of pathology, 2024-03, Vol.262 (3), p.271-288 [Periódico revisado por pares]

Chichester, UK: John Wiley & Sons, Ltd

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3
Genomic and epigenomic basis of breast invasive lobular carcinomas lacking CDH1 genetic alterations
Genomic and epigenomic basis of breast invasive lobular carcinomas lacking CDH1 genetic alterations
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Genomic and epigenomic basis of breast invasive lobular carcinomas lacking CDH1 genetic alterations

Dopeso, Higinio ; Gazzo, Andrea M ; Derakhshan, Fatemeh ; Brown, David N ; Selenica, Pier ; Jalali, Sahar ; Da Cruz Paula, Arnaud ; Marra, Antonio ; da Silva, Edaise M ; Basili, Thais ; Gusain, Laxmi ; Colon-Cartagena, Lorraine ; Bhaloo, Shirin Issa ; Green, Hunter ; Vanderbilt, Chad ; Oesterreich, Steffi ; Grabenstetter, Anne ; Kuba, M Gabriela ; Ross, Dara ; Giri, Dilip ; Wen, Hannah Y ; Zhang, Hong ; Brogi, Edi ; Weigelt, Britta ; Pareja, Fresia ; Reis-Filho, Jorge S

NPJ precision oncology, 2024-02, Vol.8 (1), p.33-33, Article 33 [Periódico revisado por pares]

England: Nature Publishing Group

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4
Nonlobular Invasive Breast Carcinomas with Biallelic Pathogenic CDH1 Somatic Alterations: A Histologic, Immunophenotypic, and Genomic Characterization
Nonlobular Invasive Breast Carcinomas with Biallelic Pathogenic CDH1 Somatic Alterations: A Histologic, Immunophenotypic, and Genomic Characterization
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Nonlobular Invasive Breast Carcinomas with Biallelic Pathogenic CDH1 Somatic Alterations: A Histologic, Immunophenotypic, and Genomic Characterization

Derakhshan, Fatemeh ; Da Cruz Paula, Arnaud ; Selenica, Pier ; da Silva, Edaise M. ; Grabenstetter, Anne ; Jalali, Sahar ; Gazzo, Andrea M. ; Dopeso, Higinio ; Marra, Antonio ; Brown, David N. ; Ross, Dara S. ; Mandelker, Diana ; Razavi, Pedram ; Chandarlapaty, Sarat ; Wen, Hannah Y. ; Brogi, Edi ; Zhang, Hong ; Weigelt, Britta ; Pareja, Fresia ; Reis-Filho, Jorge S.

Modern pathology, 2024-02, Vol.37 (2), p.100375-100375, Article 100375 [Periódico revisado por pares]

United States: Elsevier Inc

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5
Standard-of-care systemic therapy with or without stereotactic body radiotherapy in patients with oligoprogressive breast cancer or non-small-cell lung cancer (Consolidative Use of Radiotherapy to Block [CURB] oligoprogression): an open-label, randomised, controlled, phase 2 study
Standard-of-care systemic therapy with or without stereotactic body radiotherapy in patients with oligoprogressive breast cancer or non-small-cell lung cancer (Consolidative Use of Radiotherapy to Block [CURB] oligoprogression): an open-label, randomised, controlled, phase 2 study
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Standard-of-care systemic therapy with or without stereotactic body radiotherapy in patients with oligoprogressive breast cancer or non-small-cell lung cancer (Consolidative Use of Radiotherapy to Block [CURB] oligoprogression): an open-label, randomised, controlled, phase 2 study

Tsai, Chiaojung Jillian ; Yang, Jonathan T ; Shaverdian, Narek ; Patel, Juber ; Shepherd, Annemarie F ; Eng, Juliana ; Guttmann, David ; Yeh, Randy ; Gelblum, Daphna Y ; Namakydoust, Azadeh ; Preeshagul, Isabel ; Modi, Shanu ; Seidman, Andrew ; Traina, Tiffany ; Drullinsky, Pamela ; Flynn, Jessica ; Zhang, Zhigang ; Rimner, Andreas ; Gillespie, Erin F ; Gomez, Daniel R ; Lee, Nancy Y ; Berger, Michael ; Robson, Mark E ; Reis-Filho, Jorge S ; Riaz, Nadeem ; Rudin, Charles M ; Powell, Simon N ; Berger, Michael ; Bromberg, Jacqueline ; Chen, Linda ; Dang, Chau ; Das, Jeeban P ; Drullinsky, Pamela ; Eng, Julianna ; Flynn, Jessica ; Gelblum, Daphna Y ; Gillespie, Erin F ; Girshman, Jeffrey ; Gomez, Daniel R ; Gucalp, Ayca ; Guttmann, David ; Hajj, Carla ; Higginson, Daniel ; Iqbal, Afsheen ; Khan, Atif J ; LaPlant, Quincey ; Lee, Nancy Y ; Mann, Justin M ; Modi, Shanu ; Namakydoust, Azadeh ; Ng, Kenneth ; Patel, Juber ; Powell, Simon N ; Preeshagul, Isabel ; Reis-Filho, Jorge S ; Reyngold, Marsha ; Riaz, Nadeem ; Rimner, Andreas ; Robson, Mark E ; Rudin, Charles M ; Sanford, Rachel ; Seidman, Andrew D ; Shah, Ronak ; Shaverdian, Narek ; Shepherd, Annemarie F ; Shin, Jacob Y ; Sugarman, Steven ; Traina, Tiffany A ; Tsai, Chiaojung Jillian ; Wu, Abraham J ; Xu, Amy J ; Yang, Jonathan T ; Yeh, Randy ; Zhang, Zhigang ; Zhi, Wanqing

The Lancet (British edition), 2024-01, Vol.403 (10422), p.171-182 [Periódico revisado por pares]

England: Elsevier Ltd

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6
Most large structural variants in cancer genomes can be detected without long reads
Most large structural variants in cancer genomes can be detected without long reads
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Most large structural variants in cancer genomes can be detected without long reads

Choo, Zi-Ning ; Behr, Julie M ; Deshpande, Aditya ; Hadi, Kevin ; Yao, Xiaotong ; Tian, Huasong ; Takai, Kaori ; Zakusilo, George ; Rosiene, Joel ; Da Cruz Paula, Arnaud ; Weigelt, Britta ; Setton, Jeremy ; Riaz, Nadeem ; Powell, Simon N ; Busam, Klaus ; Shoushtari, Alexander N ; Ariyan, Charlotte ; Reis-Filho, Jorge ; de Lange, Titia ; Imieliński, Marcin

Nature genetics, 2023-12, Vol.55 (12), p.2139-2148 [Periódico revisado por pares]

United States: Nature Publishing Group

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7
Metaplastic Breast Cancer: Current Understanding and Future Directions
Metaplastic Breast Cancer: Current Understanding and Future Directions
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Metaplastic Breast Cancer: Current Understanding and Future Directions

Thomas, Alexandra ; Douglas, Emily ; Reis-Filho, Jorge S ; Gurcan, Metin N ; Wen, Hannah Y

Clinical breast cancer, 2023-12, Vol.23 (8), p.775-783 [Periódico revisado por pares]

United States

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8
Long-molecule scars of backup DNA repair in BRCA1- and BRCA2-deficient cancers
Long-molecule scars of backup DNA repair in BRCA1- and BRCA2-deficient cancers
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Long-molecule scars of backup DNA repair in BRCA1- and BRCA2-deficient cancers

Setton, Jeremy ; Hadi, Kevin ; Choo, Zi-Ning ; Kuchin, Katherine S. ; Tian, Huasong ; Da Cruz Paula, Arnaud ; Rosiene, Joel ; Selenica, Pier ; Behr, Julie ; Yao, Xiaotong ; Deshpande, Aditya ; Sigouros, Michael ; Manohar, Jyothi ; Nauseef, Jones T. ; Mosquera, Juan-Miguel ; Elemento, Olivier ; Weigelt, Britta ; Riaz, Nadeem ; Reis-Filho, Jorge S. ; Powell, Simon N. ; Imieliński, Marcin

Nature (London), 2023-09, Vol.621 (7977), p.129-137 [Periódico revisado por pares]

London: Nature Publishing Group

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9
Comprehensive Genomic Profiling of Cell-Free Circulating Tumor DNA Detects Response to Ribociclib Plus Letrozole in a Patient with Metastatic Breast Cancer
Comprehensive Genomic Profiling of Cell-Free Circulating Tumor DNA Detects Response to Ribociclib Plus Letrozole in a Patient with Metastatic Breast Cancer
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Comprehensive Genomic Profiling of Cell-Free Circulating Tumor DNA Detects Response to Ribociclib Plus Letrozole in a Patient with Metastatic Breast Cancer

Silveira, Catarina ; Sousa, Ana Carla ; Corredeira, Patrícia ; Martins, Marta ; Sousa, Ana Rita ; Da Cruz Paula, Arnaud ; Selenica, Pier ; Brown, David N ; Golkaram, Mahdi ; Kaplan, Shannon ; Zhang, Shile ; Liu, Li ; Weigelt, Britta ; Reis-Filho, Jorge S ; Costa, Luís ; Carmo-Fonseca, Maria

Biomolecules (Basel, Switzerland), 2022-12, Vol.12 (12), p.1818 [Periódico revisado por pares]

Switzerland: MDPI AG

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10
Germline RAD51B variants confer susceptibility to breast and ovarian cancers deficient in homologous recombination
Germline RAD51B variants confer susceptibility to breast and ovarian cancers deficient in homologous recombination
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Germline RAD51B variants confer susceptibility to breast and ovarian cancers deficient in homologous recombination

Setton, Jeremy ; Selenica, Pier ; Mukherjee, Semanti ; Shah, Rachna ; Pecorari, Isabella ; McMillan, Biko ; Pei, Isaac X ; Kemel, Yelena ; Ceyhan-Birsoy, Ozge ; Sheehan, Margaret ; Tkachuk, Kaitlyn ; Brown, David N ; Zhang, Liying ; Cadoo, Karen ; Powell, Simon ; Weigelt, Britta ; Robson, Mark ; Riaz, Nadeem ; Offit, Kenneth ; Reis-Filho, Jorge S ; Mandelker, Diana

NPJ breast cancer, 2021-10, Vol.7 (1), p.135-135, Article 135 [Periódico revisado por pares]

United States: Nature Publishing Group

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