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Access to ground truth at unconstrained size makes simulated data as indispensable as experimental data for bioinformatics methods development and benchmarking
Access to ground truth at unconstrained size makes simulated data as indispensable as experimental data for bioinformatics methods development and benchmarking
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Access to ground truth at unconstrained size makes simulated data as indispensable as experimental data for bioinformatics methods development and benchmarking

Sandve, Geir Kjetil ; Greiff, Victor Valencia, Alfonso

Bioinformatics (Oxford, England), 2022-10, Vol.38 (21), p.4994-4996 [Periódico revisado por pares]

Oxford University Press

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2
Adjustment of spurious correlations in co-expression measurements from RNA-Sequencing data
Adjustment of spurious correlations in co-expression measurements from RNA-Sequencing data
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Adjustment of spurious correlations in co-expression measurements from RNA-Sequencing data

Hsieh, Ping-Han ; Lopes-Ramos, Camila Miranda ; Zucknick, Manuela ; Sandve, Geir Kjetil ; Glass, Kimberly ; Kuijjer, Marieke Lydia Boeva, Valentina

Bioinformatics (Oxford, England), 2023-10, Vol.39 (10) [Periódico revisado por pares]

England: Oxford University Press

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3
Assessing heterogeneity in spatial data using the HTA index with applications to spatial transcriptomics and imaging
Assessing heterogeneity in spatial data using the HTA index with applications to spatial transcriptomics and imaging
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Assessing heterogeneity in spatial data using the HTA index with applications to spatial transcriptomics and imaging

Levy-Jurgenson, Alona ; Tekpli, Xavier ; Yakhini, Zohar Vitek, Olga

Bioinformatics (Oxford, England), 2021-11, Vol.37 (21), p.3796-3804 [Periódico revisado por pares]

England: Oxford University Press

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4
Bacmeta: simulator for genomic evolution in bacterial metapopulations
Bacmeta: simulator for genomic evolution in bacterial metapopulations
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Bacmeta: simulator for genomic evolution in bacterial metapopulations

Sipola, Aleksi ; Marttinen, Pekka ; Corander, Jukka Berger, Bonnie

Bioinformatics, 2018-07, Vol.34 (13), p.2308-2310 [Periódico revisado por pares]

England: Oxford University Press

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5
Benchmarking immunoinformatic tools for the analysis of antibody repertoire sequences
Benchmarking immunoinformatic tools for the analysis of antibody repertoire sequences
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Benchmarking immunoinformatic tools for the analysis of antibody repertoire sequences

Smakaj, Erand ; Babrak, Lmar ; Ohlin, Mats ; Shugay, Mikhail ; Briney, Bryan ; Tosoni, Deniz ; Galli, Christopher ; Grobelsek, Vendi ; D’Angelo, Igor ; Olson, Branden ; Reddy, Sai ; Greiff, Victor ; Trück, Johannes ; Marquez, Susanna ; Lees, William ; Miho, Enkelejda Birols, Inanc

Bioinformatics, 2020-03, Vol.36 (6), p.1731-1739 [Periódico revisado por pares]

England: Oxford University Press

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6
BiasAway: command-line and web server to generate nucleotide composition-matched DNA background sequences
BiasAway: command-line and web server to generate nucleotide composition-matched DNA background sequences
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BiasAway: command-line and web server to generate nucleotide composition-matched DNA background sequences

Khan, Aziz ; Riudavets Puig, Rafael ; Boddie, Paul ; Mathelier, Anthony Jinbo, Xu

Bioinformatics (Oxford, England), 2021-07, Vol.37 (11), p.1607-1609 [Periódico revisado por pares]

England: Oxford University Press

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7
Colocalization analyses of genomic elements: approaches, recommendations and challenges
Colocalization analyses of genomic elements: approaches, recommendations and challenges
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Colocalization analyses of genomic elements: approaches, recommendations and challenges

Kanduri, Chakravarthi ; Bock, Christoph ; Gundersen, Sveinung ; Hovig, Eivind ; Sandve, Geir Kjetil Wren, Jonathan

Bioinformatics (Oxford, England), 2019-05, Vol.35 (9), p.1615-1624 [Periódico revisado por pares]

England: Oxford University Press

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8
CompAIRR: ultra-fast comparison of adaptive immune receptor repertoires by exact and approximate sequence matching
CompAIRR: ultra-fast comparison of adaptive immune receptor repertoires by exact and approximate sequence matching
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CompAIRR: ultra-fast comparison of adaptive immune receptor repertoires by exact and approximate sequence matching

Rognes, Torbjørn ; Scheffer, Lonneke ; Greiff, Victor ; Sandve, Geir Kjetil Valencia, Alfonso

Bioinformatics, 2022-09, Vol.38 (17), p.4230-4232 [Periódico revisado por pares]

England: Oxford University Press

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9
HiBrowse: multi-purpose statistical analysis of genome-wide chromatin 3D organization
HiBrowse: multi-purpose statistical analysis of genome-wide chromatin 3D organization
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HiBrowse: multi-purpose statistical analysis of genome-wide chromatin 3D organization

Paulsen, Jonas ; Sandve, Geir Kjetil ; Gundersen, Sveinung ; Lien, Tonje G ; Trengereid, Kai ; Hovig, Eivind

Bioinformatics, 2014-06, Vol.30 (11), p.1620-1622 [Periódico revisado por pares]

England: Oxford University Press

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10
immuneSIM: tunable multi-feature simulation of B- and T-cell receptor repertoires for immunoinformatics benchmarking
immuneSIM: tunable multi-feature simulation of B- and T-cell receptor repertoires for immunoinformatics benchmarking
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immuneSIM: tunable multi-feature simulation of B- and T-cell receptor repertoires for immunoinformatics benchmarking

Weber, Cédric R ; Akbar, Rahmad ; Yermanos, Alexander ; Pavlović, Milena ; Snapkov, Igor ; Sandve, Geir K ; Reddy, Sai T ; Greiff, Victor Schwartz, Russell

Bioinformatics, 2020-06, Vol.36 (11), p.3594-3596 [Periódico revisado por pares]

England: Oxford University Press

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