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Material Type: Artigo
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pyseer: a comprehensive tool for microbial pangenome-wide association studiesLees, John A ; Galardini, Marco ; Bentley, Stephen D ; Weiser, Jeffrey N ; Corander, Jukka Stegle, OliverBioinformatics, 2018-12, Vol.34 (24), p.4310-4312 [Periódico revisado por pares]England: Oxford University PressTexto completo disponível |
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Material Type: Artigo
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RICOPILI: Rapid Imputation for COnsortias PIpeLIneLam, Max ; Awasthi, Swapnil ; Watson, Hunna J ; Goldstein, Jackie ; Panagiotaropoulou, Georgia ; Trubetskoy, Vassily ; Karlsson, Robert ; Frei, Oleksander ; Fan, Chun-Chieh ; De Witte, Ward ; Mota, Nina R ; Mullins, Niamh ; Brügger, Kim ; Lee, S Hong ; Wray, Naomi R ; Skarabis, Nora ; Huang, Hailiang ; Neale, Benjamin ; Daly, Mark J ; Mattheisen, Manuel ; Walters, Raymond ; Ripke, Stephan Schwartz, RussellBioinformatics, 2020-02, Vol.36 (3), p.930-933 [Periódico revisado por pares]England: Oxford University PressTexto completo disponível |
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3 |
Material Type: Artigo
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immuneSIM: tunable multi-feature simulation of B- and T-cell receptor repertoires for immunoinformatics benchmarkingWeber, Cédric R ; Akbar, Rahmad ; Yermanos, Alexander ; Pavlović, Milena ; Snapkov, Igor ; Sandve, Geir K ; Reddy, Sai T ; Greiff, Victor Schwartz, RussellBioinformatics, 2020-06, Vol.36 (11), p.3594-3596 [Periódico revisado por pares]England: Oxford University PressTexto completo disponível |
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4 |
Material Type: Artigo
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BiasAway: command-line and web server to generate nucleotide composition-matched DNA background sequencesKhan, Aziz ; Riudavets Puig, Rafael ; Boddie, Paul ; Mathelier, Anthony Jinbo, XuBioinformatics (Oxford, England), 2021-07, Vol.37 (11), p.1607-1609 [Periódico revisado por pares]England: Oxford University PressTexto completo disponível |
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5 |
Material Type: Artigo
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Swarm v3: towards tera-scale amplicon clusteringMahé, Frédéric ; Czech, Lucas ; Stamatakis, Alexandros ; Quince, Christopher ; de Vargas, Colomban ; Dunthorn, Micah ; Rognes, Torbjørn Birol, InancBioinformatics, 2022-01, Vol.38 (1), p.267-269 [Periódico revisado por pares]England: Oxford University PressTexto completo disponível |
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Material Type: Artigo
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Access to ground truth at unconstrained size makes simulated data as indispensable as experimental data for bioinformatics methods development and benchmarkingSandve, Geir Kjetil ; Greiff, Victor Valencia, AlfonsoBioinformatics (Oxford, England), 2022-10, Vol.38 (21), p.4994-4996 [Periódico revisado por pares]Oxford University PressTexto completo disponível |
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7 |
Material Type: Artigo
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hictk: blazing fast toolkit to work with .hic and .cool filesRossini, Roberto ; Paulsen, Jonas Valencia, AlfonsoBioinformatics (Oxford, England), 2024-07, Vol.40 (7) [Periódico revisado por pares]Oxford University PressTexto completo disponível |
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8 |
Material Type: Artigo
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Colocalization analyses of genomic elements: approaches, recommendations and challengesKanduri, Chakravarthi ; Bock, Christoph ; Gundersen, Sveinung ; Hovig, Eivind ; Sandve, Geir Kjetil Wren, JonathanBioinformatics (Oxford, England), 2019-05, Vol.35 (9), p.1615-1624 [Periódico revisado por pares]England: Oxford University PressTexto completo disponível |
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9 |
Material Type: Artigo
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CompAIRR: ultra-fast comparison of adaptive immune receptor repertoires by exact and approximate sequence matchingRognes, Torbjørn ; Scheffer, Lonneke ; Greiff, Victor ; Sandve, Geir Kjetil Valencia, AlfonsoBioinformatics, 2022-09, Vol.38 (17), p.4230-4232 [Periódico revisado por pares]England: Oxford University PressTexto completo disponível |
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10 |
Material Type: Artigo
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Benchmarking immunoinformatic tools for the analysis of antibody repertoire sequencesSmakaj, Erand ; Babrak, Lmar ; Ohlin, Mats ; Shugay, Mikhail ; Briney, Bryan ; Tosoni, Deniz ; Galli, Christopher ; Grobelsek, Vendi ; D’Angelo, Igor ; Olson, Branden ; Reddy, Sai ; Greiff, Victor ; Trück, Johannes ; Marquez, Susanna ; Lees, William ; Miho, Enkelejda Birols, InancBioinformatics, 2020-03, Vol.36 (6), p.1731-1739 [Periódico revisado por pares]England: Oxford University PressTexto completo disponível |