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1
Identifying a high fraction of the human genome to be under selective constraint using GERP
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Identifying a high fraction of the human genome to be under selective constraint using GERP

Davydov, Eugene V ; Goode, David L ; Sirota, Marina ; Cooper, Gregory M ; Sidow, Arend ; Batzoglou, Serafim Wasserman, Wyeth W.

PLoS computational biology, 2010-12, Vol.6 (12), p.e1001025-e1001025 [Peer Reviewed Journal]

United States: Public Library of Science

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2
FastTree 2--approximately maximum-likelihood trees for large alignments
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FastTree 2--approximately maximum-likelihood trees for large alignments

Price, Morgan N ; Dehal, Paramvir S ; Arkin, Adam P Poon, Art F. Y.

PloS one, 2010-03, Vol.5 (3), p.e9490-e9490 [Peer Reviewed Journal]

United States: Public Library of Science

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3
Resolving difficult phylogenetic questions: why more sequences are not enough
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Resolving difficult phylogenetic questions: why more sequences are not enough

Philippe, Hervé ; Brinkmann, Henner ; Lavrov, Dennis V ; Littlewood, D Timothy J ; Manuel, Michael ; Wörheide, Gert ; Baurain, Denis Penny, David

PLoS biology, 2011-03, Vol.9 (3), p.e1000602-e1000602 [Peer Reviewed Journal]

United States: Public Library of Science

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4
Bayesian phylogeography finds its roots
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Bayesian phylogeography finds its roots

Lemey, Philippe ; Rambaut, Andrew ; Drummond, Alexei J ; Suchard, Marc A Fraser, Christophe

PLoS computational biology, 2009-09, Vol.5 (9), p.e1000520-e1000520 [Peer Reviewed Journal]

United States: Public Library of Science

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5
A new method for predicting the subcellular localization of eukaryotic proteins with both single and multiple sites: Euk-mPLoc 2.0
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A new method for predicting the subcellular localization of eukaryotic proteins with both single and multiple sites: Euk-mPLoc 2.0

Chou, Kuo-Chen ; Shen, Hong-Bin Martin, Darren P.

PloS one, 2010-04, Vol.5 (4), p.e9931-e9931 [Peer Reviewed Journal]

United States: Public Library of Science

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6
Evidence that mutation is universally biased towards AT in bacteria
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Evidence that mutation is universally biased towards AT in bacteria

Hershberg, Ruth ; Petrov, Dmitri A Nachman, Michael W.

PLoS genetics, 2010-09, Vol.6 (9), p.e1001115-e1001115 [Peer Reviewed Journal]

United States: Public Library of Science

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7
Pervasive natural selection in the Drosophila genome?
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Pervasive natural selection in the Drosophila genome?

Sella, Guy ; Petrov, Dmitri A ; Przeworski, Molly ; Andolfatto, Peter Nachman, Michael W.

PLoS genetics, 2009-06, Vol.5 (6), p.e1000495-e1000495 [Peer Reviewed Journal]

United States: Public Library of Science

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8
Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing
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Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing

Huse, Susan M ; Dethlefsen, Les ; Huber, Julie A ; Mark Welch, David ; Welch, David Mark ; Relman, David A ; Sogin, Mitchell L Eisen, Jonathan A.

PLoS genetics, 2008-11, Vol.4 (11), p.e1000255-e1000255 [Peer Reviewed Journal]

United States: Public Library of Science

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9
RNA viruses in hymenopteran pollinators: evidence of inter-Taxa virus transmission via pollen and potential impact on non-Apis hymenopteran species
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RNA viruses in hymenopteran pollinators: evidence of inter-Taxa virus transmission via pollen and potential impact on non-Apis hymenopteran species

Singh, Rajwinder ; Levitt, Abby L ; Rajotte, Edwin G ; Holmes, Edward C ; Ostiguy, Nancy ; Vanengelsdorp, Dennis ; Lipkin, W Ian ; Depamphilis, Claude W ; Toth, Amy L ; Cox-Foster, Diana L Traveset, Anna

PloS one, 2010-12, Vol.5 (12), p.e14357 [Peer Reviewed Journal]

United States: Public Library of Science

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10
Prediction of protein binding regions in disordered proteins
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Prediction of protein binding regions in disordered proteins

Mészáros, Bálint ; Simon, István ; Dosztányi, Zsuzsanna Casadio, Rita

PLoS computational biology, 2009-05, Vol.5 (5), p.e1000376-e1000376 [Peer Reviewed Journal]

United States: Public Library of Science

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