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A predictive computational framework for direct reprogramming between human cell types
A predictive computational framework for direct reprogramming between human cell types
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A predictive computational framework for direct reprogramming between human cell types

Rackham, Owen J L ; Firas, Jaber ; Fang, Hai ; Oates, Matt E ; Holmes, Melissa L ; Knaupp, Anja S ; Suzuki, Harukazu ; Nefzger, Christian M ; Daub, Carsten O ; Shin, Jay W ; Petretto, Enrico ; Forrest, Alistair R R ; Hayashizaki, Yoshihide ; Polo, Jose M ; Gough, Julian

Nature genetics, 2016-03, Vol.48 (3), p.331-335 [Revista revisada por pares]

United States: Nature Publishing Group

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2
C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution
C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution
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C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution

Kouno, Tsukasa ; Moody, Jonathan ; Kwon, Andrew Tae-Jun ; Shibayama, Youtaro ; Kato, Sachi ; Huang, Yi ; Böttcher, Michael ; Motakis, Efthymios ; Mendez, Mickaël ; Severin, Jessica ; Luginbühl, Joachim ; Abugessaisa, Imad ; Hasegawa, Akira ; Takizawa, Satoshi ; Arakawa, Takahiro ; Furuno, Masaaki ; Ramalingam, Naveen ; West, Jay ; Suzuki, Harukazu ; Kasukawa, Takeya ; Lassmann, Timo ; Hon, Chung-Chau ; Arner, Erik ; Carninci, Piero ; Plessy, Charles ; Shin, Jay W

Nature communications, 2019-01, Vol.10 (1), p.360-360, Article 360 [Revista revisada por pares]

England: Nature Publishing Group

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3
Transcriptional profiling of VEGF-A and VEGF-C target genes in lymphatic endothelium reveals endothelial-specific molecule-1 as a novel mediator of lymphangiogenesis
Transcriptional profiling of VEGF-A and VEGF-C target genes in lymphatic endothelium reveals endothelial-specific molecule-1 as a novel mediator of lymphangiogenesis
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Transcriptional profiling of VEGF-A and VEGF-C target genes in lymphatic endothelium reveals endothelial-specific molecule-1 as a novel mediator of lymphangiogenesis

Shin, Jay W. ; Huggenberger, Reto ; Detmar, Michael

Blood, 2008-09, Vol.112 (6), p.2318-2326 [Revista revisada por pares]

Washington, DC: Elsevier Inc

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4
An era of single-cell genomics consortia
An era of single-cell genomics consortia
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An era of single-cell genomics consortia

Ando, Yoshinari ; Kwon, Andrew Tae-Jun ; Shin, Jay W

Experimental and Molecular Medicine, 2020, 52(0), , pp.1-10 [Revista revisada por pares]

United States: Springer Nature B.V

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5
Functional annotation of lncRNA in high-throughput screening
Functional annotation of lncRNA in high-throughput screening
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Functional annotation of lncRNA in high-throughput screening

Yip, Chi Wai ; Sivaraman, Divya M ; Prabhu, Anika V ; Shin, Jay W Hon, Chung Chau

Essays in biochemistry, 2021-10, Vol.65 (4), p.761-773 [Revista revisada por pares]

England: Portland Press Ltd

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6
PAPD5-mediated 3′ adenylation and subsequent degradation of miR-21 is disrupted in proliferative disease
PAPD5-mediated 3′ adenylation and subsequent degradation of miR-21 is disrupted in proliferative disease
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PAPD5-mediated 3′ adenylation and subsequent degradation of miR-21 is disrupted in proliferative disease

Boele, Joost ; Persson, Helena ; Shin, Jay W. ; Ishizu, Yuri ; Newie, Inga S. ; Søkilde, Rolf ; Hawkins, Shannon M. ; Coarfa, Cristian ; Ikeda, Kazuhiro ; Takayama, Ken-ichi ; Horie-Inoue, Kuniko ; Ando, Yoshinari ; Burroughs, A. Maxwell ; Sasaki, Chihiro ; Suzuki, Chizuru ; Sakai, Mizuho ; Aoki, Shintaro ; Ogawa, Ayumi ; Hasegawa, Akira ; Lizio, Marina ; Kaida, Kaoru ; Teusink, Bas ; Carninci, Piero ; Suzuki, Harukazu ; Inoue, Satoshi ; Gunaratne, Preethi H. ; Rovira, Carlos ; Hayashizaki, Yoshihide ; de Hoon, Michiel J. L.

Proceedings of the National Academy of Sciences - PNAS, 2014-08, Vol.111 (31), p.11467-11472 [Revista revisada por pares]

United States: National Academy of Sciences

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7
Single-cell transcriptomics reveals multiple neuronal cell types in human midbrain-specific organoids
Single-cell transcriptomics reveals multiple neuronal cell types in human midbrain-specific organoids
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Single-cell transcriptomics reveals multiple neuronal cell types in human midbrain-specific organoids

Smits, Lisa M. ; Magni, Stefano ; Kinugawa, Kaoru ; Grzyb, Kamil ; Luginbühl, Joachim ; Sabate-Soler, Sonia ; Bolognin, Silvia ; Shin, Jay W. ; Mori, Eiichiro ; Skupin, Alexander ; Schwamborn, Jens C.

Cell and tissue research, 2020-12, Vol.382 (3), p.463-476 [Revista revisada por pares]

Berlin/Heidelberg: Springer Berlin Heidelberg

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8
Batf2/Irf1 induces inflammatory responses in classically activated macrophages, lipopolysaccharides, and mycobacterial infection
Batf2/Irf1 induces inflammatory responses in classically activated macrophages, lipopolysaccharides, and mycobacterial infection
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Batf2/Irf1 induces inflammatory responses in classically activated macrophages, lipopolysaccharides, and mycobacterial infection

Roy, Sugata ; Guler, Reto ; Parihar, Suraj P ; Schmeier, Sebastian ; Kaczkowski, Bogumil ; Nishimura, Hajime ; Shin, Jay W ; Negishi, Yutaka ; Ozturk, Mumin ; Hurdayal, Ramona ; Kubosaki, Atsutaka ; Kimura, Yasumasa ; de Hoon, Michiel J L ; Hayashizaki, Yoshihide ; Brombacher, Frank ; Suzuki, Harukazu

The Journal of immunology (1950), 2015-06, Vol.194 (12), p.6035-6044 [Revista revisada por pares]

United States

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9
LETR1 is a lymphatic endothelial-specific lncRNA governing cell proliferation and migration through KLF4 and SEMA3C
LETR1 is a lymphatic endothelial-specific lncRNA governing cell proliferation and migration through KLF4 and SEMA3C
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LETR1 is a lymphatic endothelial-specific lncRNA governing cell proliferation and migration through KLF4 and SEMA3C

Ducoli, Luca ; Agrawal, Saumya ; Sibler, Eliane ; Kouno, Tsukasa ; Tacconi, Carlotta ; Hon, Chung-Chao ; Berger, Simone D ; Müllhaupt, Daniela ; He, Yuliang ; Kim, Jihye ; D'Addio, Marco ; Dieterich, Lothar C ; Carninci, Piero ; de Hoon, Michiel J L ; Shin, Jay W ; Detmar, Michael

Nature communications, 2021-02, Vol.12 (1), p.925-925, Article 925 [Revista revisada por pares]

England: Nature Publishing Group

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10
The Human Cell Atlas: Technical approaches and challenges
The Human Cell Atlas: Technical approaches and challenges
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The Human Cell Atlas: Technical approaches and challenges

Hon, Chung-Chau ; Shin, Jay W ; Carninci, Piero ; Stubbington, Michael J T

Briefings in functional genomics, 2018-07, Vol.17 (4), p.283-294

England: Oxford University Press

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