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SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes
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Artigo
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SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

PRUESSE, Elmar ; PEPLIES, Jörg ; GLÖCKNER, Frank Oliver

Bioinformatics, 2012-07, Vol.28 (14), p.1823-1829 [Periódico revisado por pares]

Oxford: Oxford University Press

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2
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
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Artigo
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The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

Quast, Christian ; Pruesse, Elmar ; Yilmaz, Pelin ; Gerken, Jan ; Schweer, Timmy ; Yarza, Pablo ; Peplies, Jörg ; Glöckner, Frank Oliver

Nucleic acids research, 2013-01, Vol.41 (Database issue), p.D590-D596 [Periódico revisado por pares]

England: Oxford University Press

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3
phyloFlash: Rapid Small-Subunit rRNA Profiling and Targeted Assembly from Metagenomes
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Artigo
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phyloFlash: Rapid Small-Subunit rRNA Profiling and Targeted Assembly from Metagenomes

Gruber-Vodicka, Harald R ; Seah, Brandon K. B ; Pruesse, Elmar Arumugam, Mani

mSystems, 2020-10, Vol.5 (5) [Periódico revisado por pares]

1752 N St., N.W., Washington, DC: American Society for Microbiology

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4
Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies
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Artigo
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Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

Klindworth, Anna ; Pruesse, Elmar ; Schweer, Timmy ; Peplies, Jörg ; Quast, Christian ; Horn, Matthias ; Glöckner, Frank Oliver

Nucleic acids research, 2013-01, Vol.41 (1), p.e1-e1 [Periódico revisado por pares]

England: Oxford University Press

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5
Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences
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Artigo
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Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences

Yarza, Pablo ; Yilmaz, Pelin ; Pruesse, Elmar ; Glöckner, Frank Oliver ; Ludwig, Wolfgang ; Schleifer, Karl-Heinz ; Whitman, William B ; Euzéby, Jean ; Amann, Rudolf ; Rosselló-Móra, Ramon

Nature reviews. Microbiology, 2014-09, Vol.12 (9), p.635-645 [Periódico revisado por pares]

England: Nature Publishing Group

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6
The SILVA and "All-species Living Tree Project (LTP)" taxonomic frameworks
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Artigo
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The SILVA and "All-species Living Tree Project (LTP)" taxonomic frameworks

Yilmaz, Pelin ; Parfrey, Laura Wegener ; Yarza, Pablo ; Gerken, Jan ; Pruesse, Elmar ; Quast, Christian ; Schweer, Timmy ; Peplies, Jörg ; Ludwig, Wolfgang ; Glöckner, Frank Oliver

Nucleic acids research, 2014-01, Vol.42 (Database issue), p.D643-D648 [Periódico revisado por pares]

England: Oxford University Press

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7
Type 2 and interferon inflammation regulate SARS-CoV-2 entry factor expression in the airway epithelium
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Artigo
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Type 2 and interferon inflammation regulate SARS-CoV-2 entry factor expression in the airway epithelium

Sajuthi, Satria P ; DeFord, Peter ; Li, Yingchun ; Jackson, Nathan D ; Montgomery, Michael T ; Everman, Jamie L ; Rios, Cydney L ; Pruesse, Elmar ; Nolin, James D ; Plender, Elizabeth G ; Wechsler, Michael E ; Mak, Angel C Y ; Eng, Celeste ; Salazar, Sandra ; Medina, Vivian ; Wohlford, Eric M ; Huntsman, Scott ; Nickerson, Deborah A ; Germer, Soren ; Zody, Michael C ; Abecasis, Gonçalo ; Kang, Hyun Min ; Rice, Kenneth M ; Kumar, Rajesh ; Oh, Sam ; Rodriguez-Santana, Jose ; Burchard, Esteban G ; Seibold, Max A

Nature communications, 2020-10, Vol.11 (1), p.5139-18, Article 5139 [Periódico revisado por pares]

England: Nature Publishing Group UK

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8
Analysis of 23S rRNA genes in metagenomes – A case study from the Global Ocean Sampling Expedition
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Artigo
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Analysis of 23S rRNA genes in metagenomes – A case study from the Global Ocean Sampling Expedition

Yilmaz, Pelin ; Kottmann, Renzo ; Pruesse, Elmar ; Quast, Christian ; Glöckner, Frank Oliver

Systematic and applied microbiology, 2011-09, Vol.34 (6), p.462-469 [Periódico revisado por pares]

München: Elsevier GmbH

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9
SILVA 138.1 SSURef NR99 (main taxonomic ranks only) formatted for phyloFlash
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Dataset
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SILVA 138.1 SSURef NR99 (main taxonomic ranks only) formatted for phyloFlash

Seah, Brandon K. B. ; SILVA Team

Zenodo 2023

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10
SILVA 138 SSURef NR99 database formatted for phyloFlash
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Dataset
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SILVA 138 SSURef NR99 database formatted for phyloFlash

Seah, Brandon K. B. ; SILVA Team

Zenodo 2023

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